Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_O18
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    67   2e-13
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 1/166 (0%)
 Frame = +1

Query: 19  MGCGTSFVKYXXXXXXXXXXXXXXXXXXXXXXXXMNWTMVKDLLKTHLAVGPWIFIVVGA 198
           M CG   +KY                        +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 199 VMFVIAFLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVL 378
           ++FVI+F GCCGAIRESHCM +T+A                 F   ++  +     +   
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKN--DDNFRNISEK 118

Query: 379 FKKRSDANADEAAEAVFSE-LQRQFECCGNTGAINYGQFTLPESCC 513
           +++  +     +    F + +Q+  +CCG     +Y    +P SCC
Sbjct: 119 YQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC 164


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 382 KKRSDANADEAAEAVFSELQRQ 447
           +KR DA  DE+ EA+F  + RQ
Sbjct: 292 EKRDDAK-DESVEAIFQSILRQ 312


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 493 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGEL 603
           T  ESC V   I + + G N  +  A    G KI EL
Sbjct: 252 TFFESCGVADLIATCYGGRNRKICEAFVKTGKKISEL 288


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 346 KESIMDGVGVLFKKRSDANADEAAEAVFSELQR 444
           K S+M   G+  +     + DE    VFS LQR
Sbjct: 96  KRSLMGAQGLSIRGLQINHEDETIRPVFSTLQR 128


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 309  DQRPPLHLRREHQGEHYGWRRR 374
            DQ+P  +L  +   + YG RR+
Sbjct: 974  DQKPTEYLLEDSMKQQYGKRRK 995


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 252 LHGRHVRNLLAGDHHCAS 305
           LH   ++N+   DHH AS
Sbjct: 349 LHSFQMKNVTIVDHHTAS 366


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = -1

Query: 309 HHLHNDDHQ-QEDCVRDDH 256
           HHL N  H  Q   V+D H
Sbjct: 142 HHLQNHHHHLQSTAVQDHH 160


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 309 DQRPPLHLRREHQGEHYGWR 368
           D RP   + +   G H+G R
Sbjct: 368 DSRPQYQIDKRSMGSHHGQR 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,746
Number of Sequences: 438
Number of extensions: 3246
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)