Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_O09
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 58 7e-10
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 28 0.61
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 4.3
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 5.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 5.7
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 7.5
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 24 9.9
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 24 9.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 9.9
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 58.0 bits (134), Expect = 7e-10
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +1
Query: 1 TGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGD 177
TGP+ N P+RR+ RYVI TS +I + + K F YF + +
Sbjct: 83 TGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FTKAYF----AKQKRSGPVKKDE 137
Query: 178 DIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLR 357
FA K +R DQK VD ++ AI A P+ ++ YL A+F L + PH ++
Sbjct: 138 AFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPN---MKEYLAASFALSNGDRPHLMK 194
Query: 358 F 360
F
Sbjct: 195 F 195
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 0.61
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +2
Query: 101 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 238
+NTS +T IRS SN + K + T LP+ K+N F S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 3.3
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +2
Query: 71 PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 250
P F +TSN +TS I S R+ ++ +TS K T +S+A S
Sbjct: 888 PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947
Query: 251 RL*SKPSEP 277
+ +EP
Sbjct: 948 SSNTLSTEP 956
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 274 ARPDKKVLRGYLKAAFGLRSSQYPHRLR 357
A PD++VLR LKAA L+ P R
Sbjct: 1401 ANPDEEVLRAKLKAAERLQKPAIPRTRR 1428
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.0 bits (52), Expect = 5.7
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 122 TSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSA 301
T+ + S +V S TSL ++ RN+F ++ + RL + P +P R
Sbjct: 40 TNSQNSSVGSVHSPILESPTSLNRQHRNSFSFNNVSSPSLEDERLINFP-RVNPNRLM-- 96
Query: 302 DTSKRPSD 325
TSKRP++
Sbjct: 97 -TSKRPNE 103
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 74 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 199
+ HS+ S+ +NT+ +++S +S+ +V+ V T K
Sbjct: 735 DLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSK 776
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 182 SLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 334
SL +++ N F ++ + I R +R +K P P S++ P +++
Sbjct: 57 SLARRRSNVFSATTPRDILRMLSRALAKNPVPSPAESESSERRHTPQTNSQ 107
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 217 EQRKTDQKTVDEAVIKAIGARPDKKV 294
++RK D K E + A GA+P K V
Sbjct: 224 DRRKEDAKLEQENLFHAQGAKPQKAV 249
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 9.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 104 NTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTR 253
N+S+ SR S ++ QSN + S +K+R KP R+ R
Sbjct: 51 NSSVPSASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEIVKPTLRKRGR 100
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.2 bits (50), Expect = 9.9
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 89 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 268
+S NTS ITS + ++S +++ V +S P + L+S+ PI +T S P
Sbjct: 3158 SSTTLNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSV--LNSSTPITSSTTLNTSTP 3215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,796
Number of Sequences: 5004
Number of extensions: 29605
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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