Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_O08
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   6.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   6.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 337  IQNEGERKANRSRRWHARLRATIVSSRRASIYTLHRSSAIAPHGSHTRYPHISCASPVNS 516
            I+ E E +    R +H+   A      + S+  L  +S   P  +H   P  + ASP +S
Sbjct: 884  IKREAEDRDEDERSFHSN-GAKEEDEDKPSVSPL--TSPRQPAETHAGSPCRNSASPASS 940

Query: 517  DRELLP 534
            DR   P
Sbjct: 941  DRSGTP 946


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 433 TLHRSSAIAPHGSHTRYPHISC 498
           ++H ++  AP+G  T+  + SC
Sbjct: 115 SMHMANTAAPNGHQTQVVYASC 136


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 499 ASPVNSDRELLPNYKCINATTER 567
           +SPV SD  L P ++ +  TTE+
Sbjct: 231 SSPVQSDVSLSPVHEPLLITTEK 253


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -2

Query: 354 FALILNY--SYFNYLFNKF 304
           + L++N   SYF Y+F KF
Sbjct: 379 YVLLINIFASYFAYIFGKF 397


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -2

Query: 354 FALILNY--SYFNYLFNKF 304
           + L++N   SYF Y+F KF
Sbjct: 379 YVLLINIFASYFAYIFGKF 397


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -2

Query: 354 FALILNY--SYFNYLFNKF 304
           + L++N   SYF Y+F KF
Sbjct: 379 YVLLINIFASYFAYIFGKF 397


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -2

Query: 354 FALILNY--SYFNYLFNKF 304
           + L++N   SYF Y+F KF
Sbjct: 379 YVLLINIFASYFAYIFGKF 397


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 397 LSAVRATASIDSLFFRPHFELFIL*LPI*QVC*PRRGYKHNFLLTSCHFDR*RVVSP 227
           L AV A  S  SLF +   E+F+  +P  + C     ++  +++     D  + V P
Sbjct: 224 LLAVEACVSFASLFQQEDIEMFV--MPTVRNCTGDTSWRVRYMVADKFTDLQKAVGP 278


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 433 TLHRSSAIAPHGSHTRYPHISC 498
           ++H ++  AP+G  T+  + SC
Sbjct: 117 SMHMANTAAPNGHQTQVVYDSC 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,232
Number of Sequences: 336
Number of extensions: 3079
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)