Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_O08
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    29   0.73 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   2.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.8  

>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 496 CASPVNSDRELLPNYKCINATTERFLKP*RDP 591
           C SP+N   + L +Y C++ TT   L    +P
Sbjct: 332 CISPINHSSDNLSDYSCVSDTTTEILSNLENP 363


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 496 RICVGSVCASRAARSRTSDVVYRYSRAGCSQSW-LSAVRATASIDSLF 356
           RICV        ++S  + ++YR  R  C   W +S     + +D LF
Sbjct: 423 RICVDEAQMVETSQSNVAQMIYRIPRVNC---WTVSGTPVRSEVDDLF 467


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 409 SSRRASIYTLHRSSAIAPHGSHTRYPHISCASPVNSDREL 528
           SS+ A   T+H+S+A  P G H      S +S  +   +L
Sbjct: 795 SSQTAVPQTIHQSNAFTPRGKHASGSRNSISSTKSPQHKL 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,545
Number of Sequences: 5004
Number of extensions: 50634
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)