Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_O08
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745...    28   7.1  
03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071     28   9.4  
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529...    28   9.4  

>10_08_0249 +
           16172811-16172987,16174048-16174299,16174426-16174505,
           16174616-16174701,16174799-16174904,16174987-16175143,
           16175220-16175315,16175797-16175845,16175946-16176205,
           16176327-16176499,16176692-16176812,16176923-16176975,
           16177088-16177217,16177371-16177516,16177887-16178075,
           16178317-16178549,16178784-16178932,16179042-16179104
          Length = 839

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 451 RTSDVVYRYSRAGCSQSWLSAVRATASIDSLFFRPHFELFIL 326
           R  DVVYR   A C    LS   A  +++ +F R    L+ L
Sbjct: 338 RARDVVYRVLSAACEDGDLSIQEAIEAVEDIFRRNALYLYKL 379


>03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071
          Length = 332

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 723 SAPPPVFXKAXGSSSAAPRCDDPKQRLSKHTR 628
           S+PPP F    G      RCD  +QR     R
Sbjct: 230 SSPPPFFTSVGGEEQRWRRCDRTRQRTGLRLR 261


>02_04_0496 +
           23446039-23446964,23452755-23452845,23452946-23452996,
           23453080-23453206,23453390-23453425,23453443-23453473,
           23453488-23453576,23454341-23454462,23455601-23455778,
           23458343-23458470,23458592-23458658,23459167-23459272,
           23459365-23459473,23459965-23460084,23460187-23460220,
           23460471-23460547,23460640-23460692,23460847-23460898,
           23461270-23461767
          Length = 964

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 409 SSRRASIYTLHRSSAIAPHGSHTRYPHISCASPVN 513
           + RRA +   H  + +A  GSH R   +SC  P++
Sbjct: 85  TGRRAGLPPDHDGTVLAAEGSHRRRCLLSCCGPMD 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,400,606
Number of Sequences: 37544
Number of extensions: 389955
Number of successful extensions: 1312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)