Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N23
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0487 + 6406826-6407086,6413538-6413996,6414401-6414570,641...    30   0.94 
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    29   1.2  
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834...    28   2.9  
04_03_0825 - 20092781-20092801,20092844-20093079,20093166-200932...    28   2.9  
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    27   6.6  
06_03_0939 + 26131405-26131596,26132753-26133166                       27   8.7  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     27   8.7  
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144...    27   8.7  

>04_01_0487 +
           6406826-6407086,6413538-6413996,6414401-6414570,
           6415146-6415175,6415777-6415939,6416020-6417132
          Length = 731

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -1

Query: 358 LSHFNCI*LVSVSHNRNSIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNM 200
           + H +C+ +VSVS NR  +  K+ +  ++ +  +CM  +   Q + E+   N+
Sbjct: 679 IQHLSCLTMVSVSTNR--LGAKLGYVEAVEDAFRCMVEAHPNQPTLEIETDNL 729


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 41  TWSYESTLINMFKFLAVRCYSCVCCR 118
           T++ E  + +MF  LA+ C S +CCR
Sbjct: 832 TFALEDDMKHMFLNLAIECASVICCR 857


>12_02_1012 -
           25281820-25281987,25282337-25282409,25283370-25283420,
           25283523-25283932,25284083-25284413,25285340-25285439,
           25287091-25287370
          Length = 470

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 56  STLINMFKFLAVRCYSCVCCRKAF--GV*VPSCLHRPSCRCIY 178
           S ++ + + L  RC +C  CR+       V  CLH    +CIY
Sbjct: 58  SEVVMVKRELLARCMTCPLCRRILRDATTVSECLHTFCRKCIY 100


>04_03_0825 -
           20092781-20092801,20092844-20093079,20093166-20093244,
           20093344-20093482,20093533-20093624,20093714-20093830,
           20093930-20094041,20094154-20094260,20094351-20094427,
           20094517-20094598,20094702-20094839,20095495-20095608
          Length = 437

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 222 WLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTLT 332
           WL C+HL  P   L  L+D+  A L AI     D +T
Sbjct: 26  WLTCVHLFMPEMPLMILVDDAGAFLPAINHSPWDGVT 62


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 180 SPDCVLCIFRLLTSWLFCLHLLGPIHLLRSL 272
           SP CV  +  LL+++ F +H+L   H+ R++
Sbjct: 261 SPPCVGDLLNLLSAFGFAIHMLRTEHISRNM 291


>06_03_0939 + 26131405-26131596,26132753-26133166
          Length = 201

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 292 IAFWLSISERSKCMGPSRCRQNSQEVSRRNMQS 194
           +A+W ++SER  C   + C    QEV+  + QS
Sbjct: 61  VAWWKAVSERGDCTYGTTCLFVPQEVTGGSPQS 93


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 209 PTHLLAILPTPTRPHTLTSFAD*QPKG 289
           P HLL   PTP+ P+  + +   +PKG
Sbjct: 283 PPHLLNASPTPSPPNFPSGYLQSRPKG 309


>02_03_0205 -
           16411707-16412759,16413077-16413256,16413960-16414498,
           16414798-16414825
          Length = 599

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -2

Query: 321 HIIEIQSHSK*PFGCQSANEVSVWGRVGVGR 229
           H+I++ S +     C++ + +S+WG +G+G+
Sbjct: 30  HLIQLVSQN-----CENHHIISIWGMIGIGK 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,224,008
Number of Sequences: 37544
Number of extensions: 140402
Number of successful extensions: 319
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)