Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N22
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 337 1e-93
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 250 2e-67
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 140 3e-34
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 103 3e-23
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 50 4e-07
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 48 1e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 44 3e-05
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 42 1e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 3e-04
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 39 7e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 39 7e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 39 0.001
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 0.001
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 36 0.005
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.005
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 36 0.007
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 33 0.046
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.061
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 32 0.081
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.14
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 31 0.19
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 29 1.00
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 3.0
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 5.3
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 7.0
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 7.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 7.0
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 7.0
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 25 9.3
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 25 9.3
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 337 bits (828), Expect = 1e-93
Identities = 157/179 (87%), Positives = 167/179 (93%)
Frame = +3
Query: 90 MGNXFAXLFKGLFGKKEMXILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 269
MG + LF+ LFGK+EM ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 270 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAV 449
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
Query: 450 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 626
LL+FANKQDLPNAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 250 bits (611), Expect = 2e-67
Identities = 117/174 (67%), Positives = 136/174 (78%)
Frame = +3
Query: 102 FAXLFKGLFGKKEMXILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 281
F+ F LF KEM ILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 282 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 461
VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVL 128
Query: 462 ANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 623
ANKQDLP A++ A+ITD L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 129 ANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 140 bits (338), Expect = 3e-34
Identities = 65/165 (39%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Frame = +3
Query: 132 KKEMXILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 308
++E+ +L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 309 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 488
+R W++YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 489 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 623
+++ EI+ L + ++ +W I + A +G + + + WL+N LK
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 103 bits (247), Expect = 3e-23
Identities = 51/131 (38%), Positives = 76/131 (58%)
Frame = +3
Query: 135 KEMXILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 314
K +L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 315 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMN 494
LWR YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 495 AAEITDKLGLH 527
E+ LGL+
Sbjct: 139 EDELKAALGLY 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 50.0 bits (114), Expect = 4e-07
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 311
+L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERF 70
Query: 312 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 479
R + Y++ G+I V D D++ ++ L + + L+ NK D+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDKI 311
+L++G GK+ +L + + I TIG F + T+E K I +WD GQ++
Sbjct: 12 LLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 71
Query: 312 RPLWRHYFQNTQGLIFVVDSNDRERIGEAR 401
R + Y++ G++ + D D++ R
Sbjct: 72 RTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = +3
Query: 150 LMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIR 314
+++G GK+ +L + E + + TIG T ++ K I +WD GQ++ R
Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYR 73
Query: 315 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 479
+ Y++ G + V D + L + L E + V+++ NK DL
Sbjct: 74 AITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +3
Query: 126 FGKKEMXILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 290
F ++ ++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 291 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANK 470
GQ++ R L Y +++ I V D + E+ + + + D ++++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNK 125
Query: 471 QDL 479
DL
Sbjct: 126 TDL 128
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 258 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 437
+ K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 438 RDAVLLIFANKQDLPN 485
V+L +K DL N
Sbjct: 118 TICVVLA-GSKSDLQN 132
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 39.1 bits (87), Expect = 7e-04
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Frame = +3
Query: 225 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSN 374
I T G + ET + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 375 DRERIGEAREELMRMLSEDELRDAVLLIFANKQDL-PNAMNAAEITDKL-GLHSLRNRNW 548
++ EA + + ++ +++F NK DL ++ + I + +
Sbjct: 279 SGNQMQEALLLWDSICNSSWFSESAMILFLNKLDLFKRKVHISPIQKHFPDYQEVGSTPT 338
Query: 549 YIQATCATSGDGLYEGLDWLSNQLKNANR 635
++Q C + + + G+ + + ++ NR
Sbjct: 339 FVQTQCPLADNAVRSGMYYFYLKFESLNR 367
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 129 GKKEMXILMVGLDAAGKTTILYKLKL 206
G ++ +L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 39.1 bits (87), Expect = 7e-04
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQDK 308
++++G A GK++++ + + TIG F +T+ E ++ +WD GQ++
Sbjct: 17 LVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQER 76
Query: 309 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 488
+ L Y++N I V D + +A+ ++ L V+ + NK DL
Sbjct: 77 YKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 489 MNAAEITD 512
A E D
Sbjct: 136 RRAVEKAD 143
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 231 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEARE 404
T+G + + ++ ++DVGGQ R W + F+N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 405 ELMRMLSEDELRDAVL 452
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKI 311
+++VG GKTT + + GE I T+G V + + I F VWD GQ+K+
Sbjct: 12 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKL 71
Query: 312 RPLWRHYFQNTQGLIFVVDSNDR 380
L Y+ Q I + D R
Sbjct: 72 GGLRDGYYIQGQCGIIMFDVTSR 94
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 36.3 bits (80), Expect = 0.005
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Frame = +3
Query: 129 GKKE--MXILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 287
GKK+ + ++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 288 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELRDAVLLI 458
D GQ++ + L +++ + V D N+ E + R+E + S ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 459 FANKQDL 479
NK D+
Sbjct: 123 LGNKVDV 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +3
Query: 153 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRP 317
M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 318 LWRHYFQNTQGLIFVVDSNDRERIGEARE 404
+ + ++F+ D + + + +E
Sbjct: 75 MLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.9 bits (79), Expect = 0.007
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKIR 314
+++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 11 LVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYE 70
Query: 315 PLWRHYFQNTQGLI--FVVDSND 377
L + ++ F +DS D
Sbjct: 71 RLRPMSYAKAHIILVGFAIDSPD 93
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.1 bits (72), Expect = 0.046
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQDK 308
+L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 5 VLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQEA 63
Query: 309 IRPLW-----RHYFQNTQGLIFVVDSNDRE 383
+ H F+N Q LI+V D RE
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 32.7 bits (71), Expect = 0.061
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ---D 305
+++VG A GKT +L G +PT+ N V VE ++I +WD GQ D
Sbjct: 9 LVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYD 68
Query: 306 KIRPL 320
++RPL
Sbjct: 69 RLRPL 73
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 32.3 bits (70), Expect = 0.081
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKIR 314
I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 16 IVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYD 75
Query: 315 PLWRHYFQNTQGLI--FVVDSND 377
L + +T ++ F VDS D
Sbjct: 76 QLRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Frame = +3
Query: 141 MXILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 305
+ ++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 306 KIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 434
+ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 31.1 bits (67), Expect = 0.19
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Frame = +3
Query: 132 KKEMXILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 311
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 312 RPLWRHYFQ---NTQGLIFVVDSNDRER-IGEAREELMRMLSEDELRDAV-LLIFANKQD 476
+ F N + ++FV++S +R + E L + + LLI NK D
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151
Query: 477 LPNAMNAAEITD--KLGLHS-LRNRNWYIQATCATSGD 581
L A A +I K LH+ L +N +++ + D
Sbjct: 152 LFTAQPAEKIQQLLKAELHNILEEKNLQLESIVSEDVD 189
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 28.7 bits (61), Expect = 1.00
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Frame = +3
Query: 366 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 524
D ND + + R+ +++L + VL + KQ +L +A N E+ + L
Sbjct: 46 DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105
Query: 525 HSLRNRNWYIQATCATSGDGLYEG--LDWLSNQLKN-ANR*PYVRQLADKS 668
+S+R N ++ AT D Y+ L ++N++ A P++ Q+ K+
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKT 156
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 8 EIVRNSLVLRFFFNSXLLRKIVLIII 85
E+ N + LRF FN L K++L II
Sbjct: 100 EVTANGIFLRFNFNGPSLTKLILPII 125
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 147 ILMVGLDAAGKTTILYKLKL 206
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 326 PPQWSDFVLASNIPHSKTNVFVFY 255
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 111 LFKGLFGKKEMXILMVGLDAAGKTTI 188
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 375 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 542
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 543 N 545
N
Sbjct: 465 N 465
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 595 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGRSCLFA 461
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 316 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 194
G++++ S MFL T+ST KPIV +V + P+ ++
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTAKPIV-VVGAMRPSTAI 158
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 316 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 194
G++++ S MFL T+ST KPIV +V + P+ ++
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTAKPIV-VVGAMRPSTAI 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,053
Number of Sequences: 5004
Number of extensions: 67057
Number of successful extensions: 235
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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