Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N20
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    29   0.48 
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    27   3.4  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.8  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 526  GCKPLP*SATLNDPLPFASNFFQHIATSHXPTYLNKTFK 642
            GC PLP  A   D  P     FQ +  +H   YL+K FK
Sbjct: 2286 GCAPLPIFALTADMQPTMETQFQEVGITH---YLSKPFK 2321


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 279 SRYNQCNQVQQCRNPTVLCIQGISFFHFNDE 187
           SRYN C   +   +P     +G  F  F DE
Sbjct: 208 SRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 514 LSTAGCKPLP*SATLNDPLPFASNFFQHIATSHXPTY 624
           L  AGCK +       D +PFAS+FF    T+  PT+
Sbjct: 169 LIKAGCKNV---VIRCDDIPFASDFFCSRETNMPPTW 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,677
Number of Sequences: 5004
Number of extensions: 61054
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)