Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N20
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    29   2.6  
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581     29   2.6  

>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 386 QKQVAICNYVCN*VVFLSIDNIGKHS*LHITQPIKTSSSSACISPLLDVNLSH 544
           +K V   N+    VV   +D + +H+ +  TQ  +  SSS+  SPLL + +++
Sbjct: 500 EKPVTTRNHAYAEVVVFVLDQMTRHTQVTSTQRKQARSSSSSASPLLSLRITY 552


>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
          Length = 250

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 377 FFCQKQVAICNYVCN*VVFLSIDNIGKHS*LHITQPIKTSSSSACISPLLDV 532
           F C  + A+C+  C+  V  +    GKH    + QP+  SSSSA   PL D+
Sbjct: 16  FCCADEAALCD-ACDRRVHSANKLAGKHRRFSLLQPLA-SSSSAQKPPLCDI 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,906
Number of Sequences: 37544
Number of extensions: 350659
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)