Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N17
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 0.94
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 2.9
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb... 26 2.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 3.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 5.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 6.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 6.7
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 24 8.8
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 24 8.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 0.94
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 109 PQSPAPQL-LPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALP 240
P S AP + P G+ V P PPV +P A VP+ + P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 26.6 bits (56), Expect = 1.6
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 13 PCPSSKQTTCPTNSSFSSLCWPCLWPLQALRQPQSPAPQL-LPYTGLDYVYTPGLVPPVI 189
P PSS+ + P S + P P + +P AP + P + V P PPV
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIP--PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Query: 190 SPYASPAAVPITYSALP 240
P + VP+ A P
Sbjct: 1125 KPSVAAPPVPVPSGAPP 1141
Score = 24.6 bits (51), Expect = 6.7
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = +1
Query: 13 PCPSSKQTTCPTNSSFSSLCWPCLWP---LQALRQPQSPAPQLLPYTGLDYVYTPGLVPP 183
P PS+ P S+ + P P + P +P P P + + + P PP
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084
Query: 184 VISPYASPAAVPITYSALP 240
V +P P + +A P
Sbjct: 1085 VPAPSGIPPVPKPSVAAPP 1103
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 202 SPAAVPITYSALPSATYYVR*NKIISR 282
SP A+P+TYS A++ NK++S+
Sbjct: 1109 SPLALPMTYSPTERASFLSYKNKVMSQ 1135
>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 109
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 118 PAPQL-LPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSA 246
P PQ P D + TP + V + +++PA+ P+T ++ PS+
Sbjct: 59 PEPQQETPKADAD-MSTPTMAEQVQTSFSNPASTPLTQTSSPSS 101
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 119 GDWGCLRAWSGQRHGQQSEENEEFVG 42
GD G + +R G EE EEF G
Sbjct: 178 GDHGSVDELESEREGNSGEEEEEFHG 203
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 115 SPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPS 243
SPA Q T +D+V+ + P +S + +VP YS+ S
Sbjct: 284 SPAAQNQHITTVDHVHPQVSMTPSLSTNNTATSVPAPYSSAAS 326
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 6.7
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Frame = +1
Query: 88 PLQALRQPQS--PAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSA 246
P LR P S P P + P + P PP+ S PA + PSA
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 6.7
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 43 PTNSSFSSLCWPCLWPLQALRQPQSPAPQLLPYTGLDYVYTPGLVPPVISPYAS 204
PT SS P ++ + P + AP TG TPGL P + PYA+
Sbjct: 460 PTTSSMPLQGMPTMFGAPGVSAPGTEAPG----TG-----TPGLTTPGVDPYAA 504
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 145 GLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT--YYVR*NKII 276
G Y PG + PV+S P + + A P Y +R +++I
Sbjct: 178 GYSYAPVPGKLSPVVSVQIHPKDLGVILIAYPDGVVLYSIRTDEVI 223
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 103 RQPQSPAPQLLPYTGLDYVYTPGLVPPVISPYA 201
R +PA +P G YT VPP+ YA
Sbjct: 664 RGASAPATYFVPQMGGMMAYTMNGVPPMYGQYA 696
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,615
Number of Sequences: 5004
Number of extensions: 25240
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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