Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N17
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 32 0.18
06_01_0486 - 3455030-3455770 29 2.2
03_01_0348 + 2739523-2741006,2742046-2742232 29 2.2
10_07_0180 - 13879648-13880064 28 2.9
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 2.9
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920... 28 3.8
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 27 5.0
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 27 5.0
06_01_0258 - 1913408-1913506,1913593-1913631,1913720-1913859,191... 27 5.0
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 27 5.0
01_01_0070 - 542603-542686,542803-543441 27 5.0
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 27 6.6
04_04_1108 + 30961600-30962013,30963131-30964465 27 6.6
04_03_0904 + 20717005-20718087 27 6.6
04_03_0902 + 20707834-20708187 27 6.6
04_03_0119 + 11485753-11486202 27 6.6
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 27 8.7
10_03_0023 - 7151465-7152111,7152222-7152405 27 8.7
01_06_1377 + 36764461-36765339 27 8.7
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 32.3 bits (70), Expect = 0.18
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 76 PCLWPLQALRQPQSPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT 249
P + P+Q ++P PAP P P + PP +P +PA P T ALP AT
Sbjct: 243 PSVAPVQPPQRP--PAPATKPPPSFPPQLAPTMPPPAHAPAETPAP-PTTPPALPPAT 297
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +1
Query: 109 PQSPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT 249
P P PY Y P +PP PY P P T +P T
Sbjct: 82 PTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPT 128
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +1
Query: 115 SPAPQLLPYTGLDYV-YTPGLVPPVISPYASPAAVPITYSALPSAT 249
SP P + PY Y P +PP PY P P +P T
Sbjct: 95 SPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPT 140
>03_01_0348 + 2739523-2741006,2742046-2742232
Length = 556
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 88 PLQALRQPQSPAPQLLPYTGLDYVYTPGLVPPVISPYA 201
PL LR P P P++LP+ + P PP +P A
Sbjct: 24 PLPLLRPPPRPLPRVLPFAART-LAAPAAPPPEAAPAA 60
>10_07_0180 - 13879648-13880064
Length = 138
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -3
Query: 137 GRSCG----AGDWGCLRAWSGQRHGQQSE 63
GR CG AG G LR W G RHG + +
Sbjct: 74 GRRCGGCRRAGATGRLRRWGGVRHGGERD 102
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 76 PCLWPLQALRQPQSPA-----PQLLPYTGLDYVYTPGLVPPVISPYASPAAV 216
P + P+ + P P P++ PY V TPG PP I+PY SP +
Sbjct: 547 PIVTPMPPIIYPSPPEVTPSPPEITPYPSPPEV-TPG--PPEITPYPSPPEI 595
>11_03_0044 -
9198016-9199143,9199579-9199674,9199771-9199846,
9200330-9200547,9200703-9200918,9201336-9201521,
9201607-9201708,9201828-9202495,9203248-9203314
Length = 918
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 112 QSPAPQLLPYTGLDYVYTPGLVPPVIS 192
QS ++ Y GL V+TP L+ PVIS
Sbjct: 69 QSQRIKIPSYVGLSTVHTPALLTPVIS 95
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 131 SCGAGDWGCLRAWSGQRHGQQSEENEEFVGHVVCFEE 21
SCG GD L S Q+ +E++ G+V EE
Sbjct: 110 SCGCGDTPLLLEESDDDQYQEQQEDDAIAGYVAFMEE 146
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.5 bits (58), Expect = 5.0
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +1
Query: 19 PSSKQTTCPTNSSFSSLCWPCLWPLQALRQPQSPAPQLLPYTGLDYVYTPGLVPPVISPY 198
P+ T+ NS+ SL P L+P Q PQ P+P Y+ GL ++PY
Sbjct: 416 PNPAVTSSMLNSN-PSLSEPQLYPSQQTVPPQQPSP-----------YSNGLTSNTMAPY 463
Query: 199 ASPAAVPITYS 231
P+ + T S
Sbjct: 464 DQPSDINATGS 474
>06_01_0258 -
1913408-1913506,1913593-1913631,1913720-1913859,
1914148-1914154,1914270-1914440,1914541-1914712,
1915367-1915741,1915892-1915910,1916508-1916581,
1916744-1916937
Length = 429
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 85 WPLQALRQPQSPAPQLLP 138
WPL A+R+P SPA +LLP
Sbjct: 20 WPL-AVRRPPSPAARLLP 36
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = +1
Query: 19 PSSKQTTCPTNSSFSSLCWPCLWPLQALRQPQSPAPQLLPYTGLDYVYTPGLVPPVISP 195
P + P N++ P LQ L P SP P LP V TP PP +P
Sbjct: 24 PYCSAVSVPNNNTHHRSSSPTQTTLQQLHSPDSPPPPPLP---TPTVTTPTPPPPPPAP 79
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 76 PCLWPLQALRQPQSPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSA 246
P + P P +P P P P PPV +P +PAA+P + P A
Sbjct: 93 PPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVA 149
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 88 PLQALRQPQS--PAP-QLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALP 240
P LR P PAP Q +P+ G PG PP A+P++ P + +P
Sbjct: 218 PTGGLRTPYGGPPAPSQQVPFGGAPQ--WPGTQPPPFGAQAAPSSQPPPFMGVP 269
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 100 LRQPQSPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT 249
L P P P G + P L V+S A PAA+PIT S P+ T
Sbjct: 89 LSVPHGPGRFSCPLCGAEIAPPPPLAA-VVSVVAPPAAIPIT-SNRPAMT 136
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.1 bits (57), Expect = 6.6
Identities = 21/80 (26%), Positives = 28/80 (35%)
Frame = +1
Query: 10 SPCPSSKQTTCPTNSSFSSLCWPCLWPLQALRQPQSPAPQLLPYTGLDYVYTPGLVPPVI 189
+P P + + T P ++ P P + P P+ P YTP PP
Sbjct: 92 TPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAP-----YTPTPTPPTY 146
Query: 190 SPYASPAAVPITYSALPSAT 249
P P P TY P T
Sbjct: 147 KPQPKPTPPP-TYKPQPKPT 165
>04_03_0902 + 20707834-20708187
Length = 117
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Frame = +1
Query: 109 PQSPAPQLLPYTGLDYVYTPGLVPPVISPYASPA--AVPITYSALPSAT 249
P P P +T + TP PP P+ SP P TYS + T
Sbjct: 45 PDKPPPYRNSHTKTNTPRTPLYAPPPPLPHTSPTPEPTPPTYSPIAKTT 93
>04_03_0119 + 11485753-11486202
Length = 149
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 10 SPCPSSKQTTCPTNSSFSSLCWPC--LWPLQALRQPQSPAPQLLPYTGLDYVYTPGLV 177
SP PSS +TC S +S C C + PL + P+ + L + P L+
Sbjct: 80 SPPPSSATSTCTALSPGTSCCRRCRRVSPLSCMLWPEIDCDDIACVRALALIDVPSLL 137
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 100 LRQPQSPAPQLLPYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSA 246
L+Q Q P PQL + PG PP + P ASP P + PS+
Sbjct: 252 LKQQQPPPPQLFNW--------PGHAPPQLPPGASPLFPPGPAAFHPSS 292
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 26.6 bits (56), Expect = 8.7
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Frame = +1
Query: 10 SPCPSSKQTTCPTNSSFSSLCWPCLWPLQALRQPQSPA--PQLLPYTGLDYVYTPGLVPP 183
+P P S SSL P L PL L P P P LLP L PG+ P
Sbjct: 206 TPSPPSILPPLTPQPPPSSLIPPVL-PLPLLNPPPPPPPPPSLLPPVPLLPPLIPGVPPA 264
Query: 184 VISPYASPAAVP 219
S P + P
Sbjct: 265 SASRSGRPVSTP 276
>01_06_1377 + 36764461-36765339
Length = 292
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 166 PGLVPPVISPYASPAAVPITYSALPSATY 252
P PP SPY P P YSA P Y
Sbjct: 160 PQYPPPSSSPYYFPPPPPPAYSAPPPPQY 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,212,009
Number of Sequences: 37544
Number of extensions: 190003
Number of successful extensions: 725
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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