Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N16
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    54   5e-09
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    29   0.13 
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    25   2.8  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    24   6.4  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    23   8.5  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    23   8.5  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   8.5  

>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 54.0 bits (124), Expect = 5e-09
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +2

Query: 200 EQTEEYVNGQLKNKYGDAFIRGNNVLYIS 286
           E+TEEYVNG+  N YGDAFIRGNNVLY+S
Sbjct: 43  ERTEEYVNGKKTNVYGDAFIRGNNVLYVS 71



 Score = 39.9 bits (89), Expect = 9e-05
 Identities = 13/28 (46%), Positives = 25/28 (89%)
 Frame = +1

Query: 85  FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
           F+ ++ G+ V+++L+SGVDY+G+L+CL+
Sbjct: 8   FLNKVIGKKVLIRLSSGVDYKGILSCLD 35


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 85  FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
           F+Q + G+PV+V+L  G +Y+G L  ++
Sbjct: 11  FLQGLIGKPVLVRLKWGQEYKGTLQSVD 38


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 73  LCPRFIQQIHGRPVVVKLNSGVDYRGVL 156
           LC + + +  G  V ++L +G  YRG L
Sbjct: 3   LCIKLLHETQGHIVTMELENGSTYRGKL 30


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 307 LNSSPLXTYIQNIIPTY 257
           LNSSP  TYI N+  +Y
Sbjct: 440 LNSSPEETYISNLHDSY 456


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 259 YECIAIFIFQLSVYIFLGL 203
           + CI+IFIF L    FL L
Sbjct: 24  FACISIFIFALLALSFLSL 42


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 61  SLRKLCPRFIQQIHGRPVVVKLNSGVDYRGVLACLEWEYIXNYXP 195
           S+  +  +FI+   G+  ++ L +G D R       + YI  Y P
Sbjct: 53  SIDHILQKFIESFDGKKQIISLGAGTDTR------VFRYISEYGP 91


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -2

Query: 270 LFPRMNASPYLF--FSCPFTYSSVC 202
           LFP+ NASP LF   SC   +++ C
Sbjct: 225 LFPQENASPPLFRKASCNSGFTTKC 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,076
Number of Sequences: 5004
Number of extensions: 23290
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)