Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N16
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 71 3e-13
02_03_0379 - 18331549-18331595,18331676-18331751 71 3e-13
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 36 0.009
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 36 0.009
09_04_0187 - 15403048-15403237,15403808-15403959,15404052-154042... 27 4.2
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 26 7.4
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 25 9.7
07_01_0222 - 1638965-1640965 25 9.7
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 25 9.7
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 70.5 bits (165), Expect = 3e-13
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2
Query: 200 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQRRRI 304
EQTEEYVNGQLKNKYGDAFIRGNNVLYIST +R +
Sbjct: 447 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYR 147
F++ I GRPVVVKLNSGVDYR
Sbjct: 24 FLKSIRGRPVVVKLNSGVDYR 44
>02_03_0379 - 18331549-18331595,18331676-18331751
Length = 40
Score = 70.5 bits (165), Expect = 3e-13
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2
Query: 200 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQRRRI 304
EQTEEYVNGQLKNKYGDAFIRGNNVLYIST +R +
Sbjct: 2 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 36
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 35.5 bits (78), Expect = 0.009
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TEEYVNGQLKNKYGDAFIRGNNVLYI 283
TEEY++GQ G+ IR NNVLY+
Sbjct: 60 TEEYIDGQFSGNLGEILIRCNNVLYL 85
Score = 33.5 bits (73), Expect = 0.037
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYRGVLACLEWEYIXNY 189
F+ + G+PV+VKL G++Y+ CL +Y Y
Sbjct: 11 FLNNLTGKPVIVKLKWGMEYKVFRFCLTIDYADGY 45
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 35.5 bits (78), Expect = 0.009
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TEEYVNGQLKNKYGDAFIRGNNVLYI 283
TEEY++GQ G+ IR NNVLY+
Sbjct: 99 TEEYIDGQFSGNLGEILIRCNNVLYL 124
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
F+ + G+PV+VKL G++Y+G L ++
Sbjct: 62 FLNNLTGKPVIVKLKWGMEYKGYLVSVD 89
>09_04_0187 -
15403048-15403237,15403808-15403959,15404052-15404210,
15404422-15404562
Length = 213
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -1
Query: 316 FSKLNSSPLXTYIQNIIPTYECIAIFIFQLSVYIFLGLFPKXYNXQ----CIPIRGTL 155
FS L S+ L ++ + ++ ++F +LS YIF G F N C +RG L
Sbjct: 67 FSALQSAALAVFLAPDLDAWKIHSLF--ELSGYIFAGAFGSGVNFYLQSWCTSVRGPL 122
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 218 VNGQLKNKYGDAFIRGNNVLYI 283
VNG KN G IRGN+V+ I
Sbjct: 63 VNGNEKNDIGMVVIRGNSVVMI 84
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 301 SSPLXTYIQNIIPTYECIAIFIFQLSVYIFL 209
S+ L Y+++I+ I F+F SVY+ L
Sbjct: 816 SAILSDYVKSIVTLVSYICTFLFPNSVYVIL 846
>07_01_0222 - 1638965-1640965
Length = 666
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 86 LYSRFTVAQLSLN*TAVLTIEVF*RASNG 172
+YS F+ A LSL+ TA +T E + +NG
Sbjct: 28 IYSGFSQANLSLDGTATITPEGLLQLTNG 56
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 43 INTKNESLRKLCPRFIQQIHG 105
INTKN S ++L P F+ +I+G
Sbjct: 85 INTKNISGQRLHPDFLSKIYG 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,481,378
Number of Sequences: 37544
Number of extensions: 132594
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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