Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N16
(319 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 75 6e-14
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 75 6e-14
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 75 6e-14
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 75 6e-14
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 36 0.034
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 36 0.034
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 36 0.034
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 36 0.034
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 36 0.034
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 36 0.034
M62400-1|AAA52509.1| 473|Homo sapiens gamma-aminobutyric acid r... 29 4.0
BC130344-1|AAI30345.1| 474|Homo sapiens gamma-aminobutyric acid... 29 4.0
AL353659-1|CAC36328.2| 473|Homo sapiens gamma-aminobutyric acid... 29 4.0
AL353135-3|CAI16246.1| 473|Homo sapiens gamma-aminobutyric acid... 29 4.0
BC150311-1|AAI50312.1| 400|Homo sapiens TBC1 domain family, mem... 28 5.2
BC132817-1|AAI32818.1| 400|Homo sapiens TBC1D13 protein protein. 28 5.2
AL441992-11|CAI15410.1| 275|Homo sapiens TBC1 domain family, me... 28 5.2
AL441992-10|CAI15411.1| 400|Homo sapiens TBC1 domain family, me... 28 5.2
AK001605-1|BAA91784.1| 275|Homo sapiens protein ( Homo sapiens ... 28 5.2
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +2
Query: 200 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQRRRI 304
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQ+RR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/37 (78%), Positives = 32/37 (86%), Gaps = 1/37 (2%)
Frame = +1
Query: 61 SLRKLCPR-FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
SLRK P F++QI GRPVVVKLNSGVDYRGVLACL+
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLD 38
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +2
Query: 200 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQRRRI 304
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQ+RR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/37 (78%), Positives = 32/37 (86%), Gaps = 1/37 (2%)
Frame = +1
Query: 61 SLRKLCPR-FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
SLRK P F++QI GRPVVVKLNSGVDYRGVLACL+
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLD 38
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +2
Query: 200 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQRRRI 304
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQ+RR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/37 (78%), Positives = 32/37 (86%), Gaps = 1/37 (2%)
Frame = +1
Query: 61 SLRKLCPR-FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
SLRK P F++QI GRPVVVKLNSGVDYRGVLACL+
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLD 38
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +2
Query: 200 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQRRRI 304
EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQ+RR+
Sbjct: 46 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/37 (78%), Positives = 32/37 (86%), Gaps = 1/37 (2%)
Frame = +1
Query: 61 SLRKLCPR-FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
SLRK P F++QI GRPVVVKLNSGVDYRGVLACL+
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLD 38
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TEEYVNGQLKNKYGDAFIRGNNVLYI 283
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
F+ + G+PV+VKL G++Y+G L ++
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVD 37
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TEEYVNGQLKNKYGDAFIRGNNVLYI 283
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
F+ + G+PV+VKL G++Y+G L ++
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVD 37
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TEEYVNGQLKNKYGDAFIRGNNVLYI 283
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
F+ + G+PV+VKL G++Y+G L ++
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVD 37
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TEEYVNGQLKNKYGDAFIRGNNVLYI 283
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
F+ + G+PV+VKL G++Y+G L ++
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVD 37
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TEEYVNGQLKNKYGDAFIRGNNVLYI 283
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
F+ + G+PV+VKL G++Y+G L ++
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVD 37
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TEEYVNGQLKNKYGDAFIRGNNVLYI 283
TEEY++G L G+ IR NNVLYI
Sbjct: 47 TEEYIDGALSGHLGEVLIRCNNVLYI 72
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 85 FIQQIHGRPVVVKLNSGVDYRGVLACLE 168
F+ + G+PV+VKL G++Y+G L ++
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVD 37
>M62400-1|AAA52509.1| 473|Homo sapiens gamma-aminobutyric acid
receptor type A rho-1 subunit protein.
Length = 473
Score = 28.7 bits (61), Expect = 4.0
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = -3
Query: 302 FFASXYLYTEHYSHV*MHRHIYFSAVRLHIPRSVPKGL*FXMYSHSRH---ARTPL*STP 132
F++S Y Y + + RHI+F ++ + P ++ L + + R AR PL T
Sbjct: 255 FYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITT 314
Query: 131 LFNLTT--TG----RP*ICCIKRGQSFLSDSFFVFIYYS 33
+ ++T TG P + IK +L S FVF++ S
Sbjct: 315 VLTMSTIITGVNASMPRVSYIKAVDIYLWVS-FVFVFLS 352
>BC130344-1|AAI30345.1| 474|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, rho 1 protein.
Length = 474
Score = 28.7 bits (61), Expect = 4.0
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = -3
Query: 302 FFASXYLYTEHYSHV*MHRHIYFSAVRLHIPRSVPKGL*FXMYSHSRH---ARTPL*STP 132
F++S Y Y + + RHI+F ++ + P ++ L + + R AR PL T
Sbjct: 256 FYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITT 315
Query: 131 LFNLTT--TG----RP*ICCIKRGQSFLSDSFFVFIYYS 33
+ ++T TG P + IK +L S FVF++ S
Sbjct: 316 VLTMSTIITGVNASMPRVSYIKAVDIYLWVS-FVFVFLS 353
>AL353659-1|CAC36328.2| 473|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, rho 1 protein.
Length = 473
Score = 28.7 bits (61), Expect = 4.0
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = -3
Query: 302 FFASXYLYTEHYSHV*MHRHIYFSAVRLHIPRSVPKGL*FXMYSHSRH---ARTPL*STP 132
F++S Y Y + + RHI+F ++ + P ++ L + + R AR PL T
Sbjct: 255 FYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITT 314
Query: 131 LFNLTT--TG----RP*ICCIKRGQSFLSDSFFVFIYYS 33
+ ++T TG P + IK +L S FVF++ S
Sbjct: 315 VLTMSTIITGVNASMPRVSYIKAVDIYLWVS-FVFVFLS 352
>AL353135-3|CAI16246.1| 473|Homo sapiens gamma-aminobutyric acid
(GABA) receptor, rho 1 protein.
Length = 473
Score = 28.7 bits (61), Expect = 4.0
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = -3
Query: 302 FFASXYLYTEHYSHV*MHRHIYFSAVRLHIPRSVPKGL*FXMYSHSRH---ARTPL*STP 132
F++S Y Y + + RHI+F ++ + P ++ L + + R AR PL T
Sbjct: 255 FYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITT 314
Query: 131 LFNLTT--TG----RP*ICCIKRGQSFLSDSFFVFIYYS 33
+ ++T TG P + IK +L S FVF++ S
Sbjct: 315 VLTMSTIITGVNASMPRVSYIKAVDIYLWVS-FVFVFLS 352
>BC150311-1|AAI50312.1| 400|Homo sapiens TBC1 domain family, member
13 protein.
Length = 400
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 130 SGVDYRGVLACLEWEYIXNYXPL 198
SG+ G L CL W+ + NY PL
Sbjct: 32 SGIPCEGGLRCLCWKILLNYLPL 54
>BC132817-1|AAI32818.1| 400|Homo sapiens TBC1D13 protein protein.
Length = 400
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 130 SGVDYRGVLACLEWEYIXNYXPL 198
SG+ G L CL W+ + NY PL
Sbjct: 32 SGIPCEGGLRCLCWKILLNYLPL 54
>AL441992-11|CAI15410.1| 275|Homo sapiens TBC1 domain family,
member 13 protein.
Length = 275
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 130 SGVDYRGVLACLEWEYIXNYXPL 198
SG+ G L CL W+ + NY PL
Sbjct: 32 SGIPCEGGLRCLCWKILLNYLPL 54
>AL441992-10|CAI15411.1| 400|Homo sapiens TBC1 domain family,
member 13 protein.
Length = 400
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 130 SGVDYRGVLACLEWEYIXNYXPL 198
SG+ G L CL W+ + NY PL
Sbjct: 32 SGIPCEGGLRCLCWKILLNYLPL 54
>AK001605-1|BAA91784.1| 275|Homo sapiens protein ( Homo sapiens
cDNA FLJ10743 fis, clone NT2RP3001642, weakly similar to
HYPOTHETICAL PROTEIN KIAA0210. ).
Length = 275
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 130 SGVDYRGVLACLEWEYIXNYXPL 198
SG+ G L CL W+ + NY PL
Sbjct: 32 SGIPCEGGLRCLCWKILLNYLPL 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,619,056
Number of Sequences: 237096
Number of extensions: 768530
Number of successful extensions: 1052
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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