Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N16
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    64   3e-11
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    31   0.14 
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr...    26   5.1  
U70849-12|AAF99920.2|  236|Caenorhabditis elegans Hypothetical p...    26   6.8  
Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z27080-2|CAA81603.1|  266|Caenorhabditis elegans Hypothetical pr...    25   8.9  

>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 200 EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQRR 298
           EQTEEY NGQL+NKYGDAFIRGNNVLYIST  +
Sbjct: 45  EQTEEYSNGQLQNKYGDAFIRGNNVLYISTSTK 77



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 22/36 (61%), Positives = 30/36 (83%)
 Frame = +1

Query: 61  SLRKLCPRFIQQIHGRPVVVKLNSGVDYRGVLACLE 168
           S R+    F++++ G+PVVVKLNSGVDYRG+LACL+
Sbjct: 2   SKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLD 37


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 209 EEYVNGQLKNKYGDAFIRGNNVLYI 283
           EEY++G  +   G+  IR NNVLY+
Sbjct: 50  EEYIDGNSQGNLGEILIRCNNVLYV 74


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 215 YVNGQLKNKYGDAFIRGNNVLYISTQRRR 301
           ++NG  K K G   ++ +N+L +S Q+RR
Sbjct: 435 WLNGGEKEKSGVPSVKASNILKMSQQKRR 463


>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical protein
            F55C5.4 protein.
          Length = 1010

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = -1

Query: 217  IFLGLFPKXYNXQCIPIRGTLEHLYSQHR--CSI*RQLGDR--ESAV*SEDKASLATHFL 50
            + L   PK  N QC  +    E+++  HR      RQ   R  E+    ED A    H  
Sbjct: 803  LLLRFIPKWMNKQCDLMEDDEENIFKNHREIVESLRQFHKRVSETDYWDEDSAKRMMHHF 862

Query: 49   CLFIIL 32
             LF I+
Sbjct: 863  MLFSIV 868


>U70849-12|AAF99920.2|  236|Caenorhabditis elegans Hypothetical
           protein F29B9.1 protein.
          Length = 236

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 243 YLFFSCPFTYSSVCSQ 196
           ++ FSC FT+  +CSQ
Sbjct: 179 FVIFSCNFTFDEMCSQ 194


>Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical
           protein C25F9.13 protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 292 LXTYIQNIIPTYECIAIFIFQLSVYI-FLGLF 200
           +  + +NII T E  AIF  +L ++I + G+F
Sbjct: 1   MSNFSKNIIKTAEVCAIFAAKLQIFISYFGVF 32


>Z27080-2|CAA81603.1|  266|Caenorhabditis elegans Hypothetical
           protein F55H2.5 protein.
          Length = 266

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 262 TYECIAIFIFQLSVYIFLGLFPKXYNXQCIPIRGTLEHLYSQHRCS 125
           T   + +F F  +V + L +    +  Q +P    L HL S H  S
Sbjct: 220 TSSFVGVFTFLYTVCVLLLVLNPRWKRQSLPEEEGLHHLTSSHSMS 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,907,622
Number of Sequences: 27780
Number of extensions: 129564
Number of successful extensions: 275
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)