Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N15
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 29 1.1
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 28 1.8
04_01_0039 + 455760-457631 27 3.2
03_06_0251 + 32654223-32654423,32655275-32655589 27 3.2
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017... 27 5.6
09_02_0410 - 8672855-8672970,8673062-8673265,8673618-8673768,867... 26 7.4
04_01_0199 - 2377406-2377573,2377649-2377730,2378006-2378274,237... 26 7.4
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 26 7.4
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178... 26 7.4
01_05_0474 - 22552599-22552687,22553494-22553631,22553766-225544... 26 7.4
04_04_1220 + 31843628-31844755 26 9.8
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 275 GNIFSFR-FTPCV*ASLLGRPASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 129
GN+ FR PC +LG P S+ CT+Y SR+ + DQ
Sbjct: 211 GNMHRFRAIAPCAILDILGPPYSTEDGRDCTYYRAIPYSRHSVKNGAADQ 260
>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 188 TFYCLHRSSRNCMLQEHPDQYQQDLSLLRQKFXGSXFXTLLNXLSKR 48
T + ++ R L HPD+ QQ + +RQK+ LL +SK+
Sbjct: 1420 TATAVKKAYRRATLCVHPDKLQQRGATIRQKYICEKVFDLLKAVSKQ 1466
>04_01_0039 + 455760-457631
Length = 623
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 271 IYLVSGLLLAY-KLHSWVVRPHHHIGTLVPS 182
IY V+G L KLH W+ H+H+G+++P+
Sbjct: 236 IYEVAGKLKKMGKLH-WLKLLHYHVGSMIPT 265
>03_06_0251 + 32654223-32654423,32655275-32655589
Length = 171
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 218 PASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 129
PAS PHRY C + MLQ+ P Q
Sbjct: 43 PASDPHRYACVQRVFGAGNTARMLQQLPVQ 72
>03_06_0742 +
35900505-35900519,35901230-35901281,35901647-35901772,
35902303-35902613,35902745-35902988,35903726-35903976,
35904071-35904277,35904546-35904713,35904798-35905127,
35905266-35905400
Length = 612
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 179 CLHRSSRNCMLQEHPDQYQQDLSLLRQKFXGSXFXTLLNXLSKR 48
CL + C++++ P++Y ++ L QKF + L LS +
Sbjct: 556 CLVALRKACIIEQEPNEYNGFVTKLCQKFRPAGDKIFLQLLSSK 599
>09_02_0410 -
8672855-8672970,8673062-8673265,8673618-8673768,
8674060-8674119,8675019-8675024
Length = 178
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 293 LRTNNTGNIFSFR-FTPCV*ASLLGRPASSPHRYPCTFY 180
++ + GNI +F+ TPC +L P SS C+++
Sbjct: 93 IQPKDGGNIHAFKAITPCAILDILSPPYSSEDGRHCSYF 131
>04_01_0199 -
2377406-2377573,2377649-2377730,2378006-2378274,
2379648-2379788,2380891-2381076,2381529-2381765,
2382077-2382292,2382389-2382719,2382842-2382954,
2383288-2383602,2383713-2383840,2385274-2385547
Length = 819
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 289 EQTTQAIYLVSGLLLAYKLHSWVVRPHHHIGTLV 188
E+T ++ V G+ +L W V P HIG ++
Sbjct: 730 EETNIVLWYVFGVTHVPRLEDWPVMPVEHIGFML 763
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 328 SLNRPILHNIWI*EQTTQA-IYLVSGL 251
SL P++HN+WI T A Y +GL
Sbjct: 287 SLLSPVMHNLWIWRGTGNANFYFATGL 313
>01_06_1488 +
37716986-37717076,37717424-37717558,37717755-37717831,
37717934-37718181,37718503-37718559,37718665-37718800,
37718944-37719001,37719110-37719195,37719270-37719326,
37719537-37719557,37720553-37720954,37721500-37721647,
37721940-37722036,37724065-37724202,37724496-37724598,
37724792-37724828,37724905-37725014,37725141-37725164
Length = 674
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 328 SLNRPILHNIWI*EQTTQA-IYLVSGL 251
SL P++HN+WI T A Y +GL
Sbjct: 283 SLLSPVMHNLWIWRGTGNANFYFATGL 309
>01_05_0474 -
22552599-22552687,22553494-22553631,22553766-22554447,
22555120-22555167,22555395-22556042,22556960-22557310,
22558622-22558690
Length = 674
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 148 SIQ-LREERWRQ*KVQGYLCGDEAGRPKSEAYTQ 246
SIQ L +RW + K+ G++ GD GR E YT+
Sbjct: 630 SIQRLLIKRWLRGKLGGWVHGDYTGRFPLEKYTE 663
>04_04_1220 + 31843628-31844755
Length = 375
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = +1
Query: 136 GCSWSIQLREERWRQ*KVQGY------LCGDEAG 219
G +W+IQ+ +RW+Q GY LCG G
Sbjct: 67 GHNWNIQVYPDRWKQEMNAGYVSVFLCLCGGATG 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,980,063
Number of Sequences: 37544
Number of extensions: 136892
Number of successful extensions: 338
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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