Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N15
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical...    27   3.8  
U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z68006-5|CAE17869.1|   97|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical...    26   8.7  

>AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical
           protein Y113G7B.18 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 139 CSWSIQLREER--WRQ*KVQGYLCGD 210
           C +  +LRE R  WR  KV  Y+CGD
Sbjct: 274 CGFLRELREMREIWRVRKVGDYICGD 299


>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 251 TPCV*ASLLGRPASSPHRYPCTFYCLHRSSRNCMLQEHPD 132
           T  + AS L +        P T   LHRS R C    HPD
Sbjct: 36  TELITASELMQKCREKKPVPATLEELHRSQRLCQSAFHPD 75


>Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical
           protein T03F6.9 protein.
          Length = 138

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 106 NRLRSCWYWSGCSW 147
           N +RSC Y +GC+W
Sbjct: 70  NTIRSCSYETGCTW 83


>Z68006-5|CAE17869.1|   97|Caenorhabditis elegans Hypothetical
           protein K09C8.7 protein.
          Length = 97

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 280 TQAIYLVSGLLLAYKLHSWVVRPHHHIG 197
           T  IY+VS LL+   L  W   P+H  G
Sbjct: 2   TVKIYIVSCLLVGAVLSQWPYAPNHWYG 29


>AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical
           protein Y60A3A.6 protein.
          Length = 333

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 302 YLDLRTNNTGNIFSFRFTPCV*ASLLGRP 216
           +LD+ +   G +F+F   PC+ + +  RP
Sbjct: 154 FLDIPSEEYGRVFTFEKIPCIPSDIPFRP 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,731,994
Number of Sequences: 27780
Number of extensions: 114590
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)