Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N14
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    77   1e-15
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    75   2e-15
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   4.5  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.0  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    24   7.9  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 76.6 bits (180), Expect = 1e-15
 Identities = 35/63 (55%), Positives = 39/63 (61%)
 Frame = +1

Query: 19  CGLSSSHXQKSKCAQCGXPAAKLRSYHWSVKAKXXXXXXXXXMRHLKIVRRRFRNGFKEG 198
           CG  S H QKS CA CG PAAK RSY+W  KAK         M +LK V R F+NGF+ G
Sbjct: 22  CGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81

Query: 199 KPT 207
           KPT
Sbjct: 82  KPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 75.4 bits (177), Expect = 2e-15
 Identities = 36/70 (51%), Positives = 40/70 (57%)
 Frame = +1

Query: 19  CGLSSSHXQKSKCAQCGXPAAKLRSYHWSVKAKXXXXXXXXXMRHLKIVRRRFRNGFKEG 198
           CG  S H QKS CA CG PAAK RSY+W  KAK         M +LK V R F+NGF+ G
Sbjct: 22  CGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSG 81

Query: 199 KPTPPKKAVA 228
           KP     A A
Sbjct: 82  KPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 164 TIFK*RMRPVPVXXLRLAFTDQW*ERNFAAGXPHWAHF 51
           T+F   +  +PV  +   FT+ W   N A   P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 264 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 169
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 3   RFCSPLWSLVISXSKIKMRP-MWXSCSKITLLP 98
           RFC+ +WS      KIK  P ++ S  K  ++P
Sbjct: 214 RFCTEIWSSQDEIRKIKKLPVLFLSGEKDEIVP 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 953,563
Number of Sequences: 5004
Number of extensions: 13561
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)