Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N10
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1653 + 35070026-35070064,35070358-35070408,35070490-350705... 31 0.58
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 31 0.77
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 30 1.0
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 29 2.3
04_04_0049 - 22356139-22357649,22357764-22357995 29 3.1
04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991... 28 4.1
09_06_0346 + 22435164-22435491,22435990-22436114,22436402-224365... 28 5.4
09_06_0215 - 21621889-21621949,21622275-21622333,21622442-216225... 28 5.4
07_03_0050 + 12817959-12818281,12818604-12818688,12819144-128192... 28 5.4
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 28 5.4
01_04_0052 + 15435709-15436004,15437760-15438255,15439171-15439320 28 5.4
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 27 7.2
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580... 27 7.2
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 27 7.2
>04_04_1653 +
35070026-35070064,35070358-35070408,35070490-35070582,
35070758-35070855,35072437-35072551,35072628-35072720
Length = 162
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 155 AHHWTPPKGHVDPGXTDWMTALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYW 334
A+ W P+G +D G A RE +EE G+ + + T ++ V+ + K W
Sbjct: 23 ANTWQMPQGGIDAGEDPREAAFRELREETGVTSAEMVAEVPVWLTYDFPVDVKEKLNARW 82
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 164 WTPPKGHVDPGXTDWMTALRETKEEAGLCEDHLDI 268
W P G V+PG + A+RE KEE G+ + +++
Sbjct: 147 WKFPTGVVEPGEDINLGAVREVKEETGIDTEFVEV 181
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 63 QFCLLSXPQVWFFSAILIKXSNSSYCKHPTEHII 164
+ C P+V+ F + + SYCK TEH++
Sbjct: 367 RICFFKIPEVYAFDLSKLHLLDFSYCKFDTEHLL 400
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 317 KTVV-YWLAKLKNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYEKCK 481
KT++ W A+ PEQ V L E +MK L E+ ED + ++E + K
Sbjct: 765 KTIMALWKARSLTPEQKVQLVEEESEMKDLQNNESDSFLGIEDAK--MSEVFSSTK 818
>04_04_0049 - 22356139-22357649,22357764-22357995
Length = 580
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 71 SSFXAAGLVLFSNSHQIXQFLLLQTSYGAHHWTPPKGHVDPGXTDWMTA 217
SS A L + + + LL+ +GA WTP GH T W++A
Sbjct: 22 SSSSAVRPALLAIAVSVMVVLLMAVLFGAR-WTPSGGHGGGADTSWVSA 69
>04_04_0703 +
27398358-27398466,27398549-27398859,27399044-27399109,
27399196-27399258,27399304-27399444,27399535-27399612,
27399688-27399738,27399829-27399863,27399982-27400090,
27400235-27400441
Length = 389
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 164 WTPPKGHVDPGXTDWMTALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYWLAK 343
W P G + + A RE KEE G+ + +D+ N K+ ++++
Sbjct: 247 WKLPTGFILASEEIFTGATREVKEETGVDTEFVDVVA-FRHAHNVAFQ---KSDLFFICM 302
Query: 344 LKNPEQTVTL-SSEHQDMKWLSLQE 415
L+ + + +E Q KW+ L+E
Sbjct: 303 LRPTSNNIKIDETEIQAAKWMPLEE 327
>09_06_0346 +
22435164-22435491,22435990-22436114,22436402-22436514,
22436919-22437023,22437147-22437531,22437645-22437776,
22437980-22438450,22438550-22439278,22439579-22439767
Length = 858
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/71 (25%), Positives = 41/71 (57%)
Frame = +2
Query: 221 RETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKW 400
R T+E+ L ++HL IY ++ K N ++ + +++ + + E+ T+ E Q K
Sbjct: 414 RLTREKVSLEKEHLQIYNELQKA-NEQIMELERKLMHANSLM---EELQTVQGELQRQKD 469
Query: 401 LSLQEAQEISK 433
+++EA+++S+
Sbjct: 470 NAVKEAEKMSQ 480
>09_06_0215 -
21621889-21621949,21622275-21622333,21622442-21622582,
21622669-21622804,21623266-21623342,21623594-21623725,
21624915-21624938,21626147-21626365,21626401-21626718
Length = 388
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = +2
Query: 137 LQTSYGAHHWTPPKGHVDPGXTDWMTALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEP 316
++ +YG WT P G+++ G + A RET EEA C D ++I + L+ + G+
Sbjct: 250 IEPAYGL--WTLPAGYLEVGESAAEGASRETLEEA--CAD-VEILSPFAQ-LDIPLIGQ- 302
Query: 317 KTVVYWLAKLKNP 355
+ + + A+LK P
Sbjct: 303 -SYIIFRARLKTP 314
>07_03_0050 +
12817959-12818281,12818604-12818688,12819144-12819213,
12819900-12819970,12820417-12820440
Length = 190
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 173 PKGHVDPGXTDWMTALRETKEEAGLCEDHLDIYKDINKTLNY--EVNGEPK 319
P HV D ++ + KE G+ D+Y+D TLNY ++ PK
Sbjct: 80 PLTHVINLRLDILSFRQNEKESLGVAWARDDLYEDYENTLNYSSKIKAHPK 130
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 173 PKGHVDPGXTD-WMTALRETKEEAGL 247
P G V+ G D TALRE KEE GL
Sbjct: 102 PGGKVEEGDADATATALREAKEEIGL 127
>01_04_0052 + 15435709-15436004,15437760-15438255,15439171-15439320
Length = 313
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +2
Query: 134 LLQTSYGAHHWTPPKGHVDPGXTDWMTALRETKEEAGLCEDHLDIYKDINKTLNYEVNGE 313
+LQ YG + H D + + L E ++ A L H+ + ++ + L Y+ N
Sbjct: 222 VLQEIYGIGNTADKNAHEDDSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKC 281
Query: 314 P 316
P
Sbjct: 282 P 282
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 420 CASCN-ESHFISWCSDERVTVCSGFLSF 340
C SC HFI C ER T SG++ +
Sbjct: 177 CRSCGVPGHFIQHCQQERKTPPSGYVCY 204
>02_04_0020 -
18956282-18956461,18956591-18956740,18957934-18958017,
18958283-18958403,18958525-18958604
Length = 204
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Frame = +2
Query: 173 PKGHVDPGXTDWMTALRETKEEAGL--CEDHLDIYKDINKTLNYEVNGEPKTVV--YWLA 340
PKG + + A RE EEAG+ + + + K+ + + + P+ Y A
Sbjct: 66 PKGGWEDDEEVYEAASREAMEEAGVKGIVNRTTLGHWVFKSKSSQNSSSPRGACKGYIFA 125
Query: 341 KLKNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYEK 475
E +W+S EA ++ +YE MR+ L E+
Sbjct: 126 MEVTEELESWPEQATHGRRWVSPGEAYQLCRYEWMREALTALLER 170
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 8 PLXHSLCGCKFCKNSNQIXVLSSFXAAGLVLFSNSHQIXQFLL 136
P+ H+ C CK C +N I A G S +I +FLL
Sbjct: 148 PVCHNNCNCKTCLRTNVINKGDKEFADGKNKIKYSLRIARFLL 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,981
Number of Sequences: 37544
Number of extensions: 209458
Number of successful extensions: 545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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