Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N10
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical ... 153 1e-37
U55855-1|AAA98017.1| 188|Caenorhabditis elegans Nudix family pr... 41 6e-04
Z82053-2|CAB04835.1| 365|Caenorhabditis elegans Hypothetical pr... 30 0.92
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 2.1
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 2.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 2.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 2.1
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 2.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 2.1
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 29 2.8
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 3.7
U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine d... 28 3.7
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 3.7
AF067946-2|AAC17685.1| 223|Caenorhabditis elegans Nudix family ... 28 4.9
Z35641-2|CAA84707.2| 389|Caenorhabditis elegans Hypothetical pr... 27 6.5
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF269063-1|AAG36940.1| 389|Caenorhabditis elegans core1 UDP-gal... 27 6.5
U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1 dual-specif... 27 8.6
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 8.6
AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like phos... 27 8.6
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related... 27 8.6
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related... 27 8.6
>AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical
protein Y37H9A.6 protein.
Length = 138
Score = 153 bits (370), Expect = 1e-37
Identities = 69/128 (53%), Positives = 91/128 (71%)
Frame = +2
Query: 83 AAGLVLFSNSHQIXQFLLLQTSYGAHHWTPPKGHVDPGXTDWMTALRETKEEAGLCEDHL 262
AAGLV++ +FLLLQ SY HHWTPPKGHVDPG +W A+RETKEEA + ++ L
Sbjct: 5 AAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQL 64
Query: 263 DIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSLQEAQEISKYED 442
I++D ++TL YE G+PK+V YWLAKL NP+ V LS EHQ+ KW L++A +I+ Y +
Sbjct: 65 TIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDD-VQLSHEHQNWKWCELEDAIKIADYAE 123
Query: 443 MRQLLAEF 466
M LL +F
Sbjct: 124 MGSLLRKF 131
>U55855-1|AAA98017.1| 188|Caenorhabditis elegans Nudix family
protein 3 protein.
Length = 188
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +2
Query: 173 PKGHVDPGXTDWMTALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYWLAKLKN 352
P G +DPG T TALRET EE G+ + ++I+ + + + + +V +++ +
Sbjct: 35 PGGRMDPGETTTETALRETFEEIGVNAESVEIWGHLKSVIRRQADFNVTPIVGYISDERV 94
Query: 353 PEQTVTLSSEHQDMKWLSLQE 415
E V S E Q + + + E
Sbjct: 95 LENLVVNSDEVQAVFTIPIDE 115
>Z82053-2|CAB04835.1| 365|Caenorhabditis elegans Hypothetical
protein T26E3.2 protein.
Length = 365
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 74 SFXAAGLVLFSNSHQIXQFLLLQTSYGAH-HWTPPKGHVDPGXTDWMTALRETKEEAGLC 250
++ AA ++L + L+ + W P G V+ G T +RE KEE G
Sbjct: 73 NYVAAAIILRNQGDDTEVLLIQEAKKSCRGKWYMPAGRVEAGETIEEAVVREVKEETGYS 132
Query: 251 EDHLDI 268
D +++
Sbjct: 133 CDVVEL 138
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 290 LNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 409
L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3836 LKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 290 LNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 409
L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3196 LKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3235
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 290 LNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 409
L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3836 LKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 290 LNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 409
L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3836 LKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 290 LNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 409
L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3196 LKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3235
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 290 LNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 409
L +V GEP+ + W + K E + + +EH+D L+L
Sbjct: 3836 LKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/82 (18%), Positives = 31/82 (37%)
Frame = +2
Query: 206 WMTALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEH 385
W+ +L K+ G + + + +D + +G P ++W E
Sbjct: 142 WLNSLYRDKKNGGQMDSWIGLRRDCDNVTYIWTDGSPTDCLWWQPDYPKSEFAEFSCVTI 201
Query: 386 QDMKWLSLQEAQEISKYEDMRQ 451
+ WL A +Y+DM++
Sbjct: 202 WETDWLYDNPAYIPGQYDDMKE 223
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 28.3 bits (60), Expect = 3.7
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +2
Query: 185 VDPGXTDWMTALRETKEEAG-LCEDHLDIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQ 361
V PG +RE +++ +C++HL IY D+ + + + +Y + L +
Sbjct: 2102 VFPGIHYTANQMRELRQQLSTVCDEHLLIYSDVQGEMG-SMWLDKVLQLYQITNLNHGLM 2160
Query: 362 TVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYEKCKSR*SNY 499
V S + M W L +A E ++E++ + K S+ S Y
Sbjct: 2161 LVGSSGSGKTMAWKVLLKALE--RWENVEGVAHVIDAKAMSKDSLY 2204
>U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine dna
alkyltransferaseprotein 2 protein.
Length = 274
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 257 HLDIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSLQEAQE 424
H+ K++ + N + +P VV ++ P ++ S EH M + LQE +E
Sbjct: 44 HVGRAKNVKEIFNCILQTQPLPVVQPCHPVRQPRESFYSSHEHDPMDEVLLQEVKE 99
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 28.3 bits (60), Expect = 3.7
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +2
Query: 185 VDPGXTDWMTALRETKEEAG-LCEDHLDIYKDINKTLNYEVNGEPKTVVYWLAKLKNPEQ 361
V PG +RE +++ +C++HL IY D+ + + + +Y + L +
Sbjct: 2102 VFPGIHYTANQMRELRQQLSTVCDEHLLIYSDVQGEMG-SMWLDKVLQLYQITNLNHGLM 2160
Query: 362 TVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYEKCKSR*SNY 499
V S + M W L +A E ++E++ + K S+ S Y
Sbjct: 2161 LVGSSGSGKTMAWKVLLKALE--RWENVEGVAHVIDAKAMSKDSLY 2204
>AF067946-2|AAC17685.1| 223|Caenorhabditis elegans Nudix family
protein 2 protein.
Length = 223
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 173 PKGHVDPGXTDWMTALRETKEEAG 244
P G +D G T A+RE KEE G
Sbjct: 109 PAGLIDAGETAQQAAIRELKEETG 132
>Z35641-2|CAA84707.2| 389|Caenorhabditis elegans Hypothetical
protein C38H2.2 protein.
Length = 389
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 158 HHWTPPKGHVDPGXTDWMTALRETKEEAGLCEDHLDIYKDINKTLNY 298
HH +P GHVDP W + C D+ + +N L Y
Sbjct: 293 HHLSP--GHVDPKFWFWQYTYYPMDQGPTCCSDYAVSFHYVNPNLMY 337
>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
protein K09C4.10 protein.
Length = 1035
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 224 ETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVV-YWLAKLKNP 355
+ K E H+D+ INK L + +N + V Y L KL P
Sbjct: 17 DLKREMTYVSYHMDLGNGINKELRFSLNNKNTYVTHYMLEKLPRP 61
>AF269063-1|AAG36940.1| 389|Caenorhabditis elegans core1
UDP-galactose:N-acetylgalactosamine-alpha-R beta
1,3-galactosyltransferase protein.
Length = 389
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 158 HHWTPPKGHVDPGXTDWMTALRETKEEAGLCEDHLDIYKDINKTLNY 298
HH +P GHVDP W + C D+ + +N L Y
Sbjct: 293 HHLSP--GHVDPKFWFWQYTYYPMDQGPTCCSDYAVSFHYVNPNLMY 337
>U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform a
protein.
Length = 657
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 163 MMCSVGCLQ*EELXNLMRIAEKNQTCGXERR 71
M CS GC + +E +L+ AE+++ G +RR
Sbjct: 72 MSCSSGCTKMDEKLDLVLYAEEDKPRGNKRR 102
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 110 SHQIXQFLLLQTSYGAHHWTPPKGHVDPGXT 202
SH+ + + ++G+H T P GHV G T
Sbjct: 2319 SHKCDRVATCRNTFGSHVCTCPDGHVGDGIT 2349
>AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like
phosphatase 1 protein.
Length = 657
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 163 MMCSVGCLQ*EELXNLMRIAEKNQTCGXERR 71
M CS GC + +E +L+ AE+++ G +RR
Sbjct: 72 MSCSSGCTKMDEKLDLVLYAEEDKPRGNKRR 102
>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
helicase protein.
Length = 1037
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 212 TALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYWL---AKLKNPEQTVTL 373
T+ RET + + LD+ K+ TL+Y +N P+ + +L + + P TV +
Sbjct: 606 TSFRETGTRT-IINEALDVLKECFCTLSYNINFHPEVALNYLKDEMEYRTPNFTVNM 661
>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
helicase protein 1 protein.
Length = 1037
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 212 TALRETKEEAGLCEDHLDIYKDINKTLNYEVNGEPKTVVYWL---AKLKNPEQTVTL 373
T+ RET + + LD+ K+ TL+Y +N P+ + +L + + P TV +
Sbjct: 606 TSFRETGTRT-IINEALDVLKECFCTLSYNINFHPEVALNYLKDEMEYRTPNFTVNM 661
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,636,061
Number of Sequences: 27780
Number of extensions: 199346
Number of successful extensions: 592
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -