Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N09
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.53 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.6  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   2.1  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.9  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.9  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   6.5  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   6.5  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   6.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.6  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -2

Query: 381 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 235
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 311 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 406
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 418 RFQGTSSIRTSKILISRRIQSQLSLLTIG*KKIPITALR 534
           RFQ T SIRT        I +QL + +IG K +P+  ++
Sbjct: 308 RFQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLPGMK 346


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 97  NLSNVLKNGNDNFTARMFTEVVKNNPGXKHCPLGI 201
           N  N+LK  ND   AR +TE V      K  P GI
Sbjct: 56  NSQNLLKQLNDEMKARKYTETVATFSSLK--PFGI 88


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 582 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 677
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 511 SSTQSLIDLAATVFFEKSI-FWTSELKTXPG 422
           SST  L+   +   FE+ I FW  E KT PG
Sbjct: 645 SSTMKLVGNPSGPEFERLIRFWCDERKTIPG 675


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 24  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 122
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 471 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 560
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 508  STQSLIDLAATVFFEKSIFWTSE 440
            STQ+ +D   T FFE  IF+T +
Sbjct: 1123 STQNGLDATETSFFELQIFFTQD 1145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,846
Number of Sequences: 5004
Number of extensions: 56283
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)