Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N08
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 51 1e-07
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 45 8e-06
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 42 1e-04
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 40 4e-04
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 33 0.026
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 32 0.061
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 1.7
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 4.0
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 25 7.0
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 9.3
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 25 9.3
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.3
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 476 CPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLD--STNCCEGSDKXIYCKVC 634
C +C V + Q+ G+ WH +CFKC +C K+LD S + + K I+CK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 155 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 310
C KC +SV + + GG WH CFKC C K LD ++ + + +++CK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 45.2 bits (102), Expect = 8e-06
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 155 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 325
C CG S+ A A G K H CFKC C + L+ EG+ YC + + +F
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQF 314
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 470 EGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKXIYCKVCY 637
+ C CGG + A + A G+ H +CFKC C + L+ K YC + Y
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK-FYCHLDY 310
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 152 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHA 316
KC KC K + + + G ++H C+ CG C LL E C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 443 RSIAKAPPGEG---CPRCGGYVYAAEQMLA-RGRAWHKECFKCGDCMKRLDSTN--CCEG 604
+SI+K+P +G C RCG E ++ G WHK+CF C C K L+ ++ +
Sbjct: 5 KSISKSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQT 64
Query: 605 SDKXIYCKVC 634
SD C C
Sbjct: 65 SDGRPVCSSC 74
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 155 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 310
C +CG++ E ++ GG WHK CF C C K L+ ++ +G C C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 35.5 bits (78), Expect = 0.007
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 533 AWHKECFKCGDCMKRLDSTNCCEGSDKXIYCKVC 634
++H+ECF+C DC K++ +N + ++ I+C C
Sbjct: 96 SYHRECFRCHDCRKQIIDSN-FKRDNRTIFCNDC 128
Score = 32.7 bits (71), Expect = 0.046
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +2
Query: 149 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVC 310
P C C + A R+ +G +H+ CF+C C+K + +N ++C C
Sbjct: 69 PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 389 LKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDC 568
L E ++ + + P+++ K + C CG V + + + A G +H ECF+C DC
Sbjct: 87 LNKEEQQSLKRSDTSVFPKAVRKVSSSKICASCG-QVISGQYVRALGNIYHLECFRCHDC 145
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 33.5 bits (73), Expect = 0.026
Identities = 42/175 (24%), Positives = 60/175 (34%), Gaps = 4/175 (2%)
Frame = +2
Query: 122 TMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYC 301
T+P P+C CG++ + A E G + C+ C Q ++ C+E + E C
Sbjct: 8 TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60
Query: 302 KVC----HARKFXXXXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPG 469
C H + C H+ A RTNG R
Sbjct: 61 YACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHI----ARDCRTNGQQSGGR-FGGHRSN 115
Query: 470 EGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKXIYCKVC 634
C CG Y + AR +C+ CG R S C + SD + C C
Sbjct: 116 MNCYACGSYGHQ-----ARDCTMGVKCYSCGKIGHR--SFECQQASDGQL-CYKC 162
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 32.3 bits (70), Expect = 0.061
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 155 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSE--HEGELYCKVCH 313
C CG A ++ ++ W K C CGL + + CSE G C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCH 155
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 212 KWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 313
K+H C CG C+ +S E+ ++CK C+
Sbjct: 65 KFHIPCVICGACK---NSLTVEEYRSTVHCKYCN 95
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 264 ESSNFWHRPHLKHILCHLRPP 202
E+SN++ P L+H LCH PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = +2
Query: 362 CLSMDTG----DHLK--GENAGGVRTNGACLEPRSI 451
C SMD G D LK GEN + +G C P+SI
Sbjct: 258 CTSMDRGKMSDDFLKLDGENGNQLFISGDCYRPQSI 293
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 173 SVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCS 277
SVY A+++ L+WH G+ L ST S
Sbjct: 189 SVYEAQQKRPFSLRWHTSLLSTGVALGLALSTKLS 223
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 309 HTLQYSSPSCSEQLVESSNFWHRPHLKHIL 220
HT + PSCS Q PH K ++
Sbjct: 253 HTFHATCPSCSHQCDTHMKLLDIPHFKEVI 282
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 422 NGACLEPRSIAKAPPGEGCPRCGGYVYAAEQMLARGR 532
NG + A A PG C R GGY+ + L GR
Sbjct: 378 NGLFVVGPESAGAHPGPVCYRKGGYLTVTDANLLLGR 414
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,083
Number of Sequences: 5004
Number of extensions: 44257
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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