Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N07
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0082 + 12059692-12060209,12060484-12060973                       28   6.0  
11_02_0125 + 8572035-8572112,8573603-8574016,8574171-8574428,857...    27   8.0  

>08_02_0082 + 12059692-12060209,12060484-12060973
          Length = 335

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -1

Query: 430 PL*KHCKIAKALSAASWPVLFLHCSSTLWASDLLTPEGSFASATTMFNVPSEFKIADFLK 251
           PL +H     A+SAA    +   C    W S++  P     +    F   ++  +   L+
Sbjct: 33  PLTEHDDAISAMSAAHCNNMQFRCYRGFWISEMWAP--GVVAVHRSFAPRADDVLVASLQ 90

Query: 250 KQSTNFLKALS 218
           K  T +LKAL+
Sbjct: 91  KSGTTWLKALT 101


>11_02_0125 +
           8572035-8572112,8573603-8574016,8574171-8574428,
           8574781-8574966
          Length = 311

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 240 VLCFFKKSAILNSDGTLNMVVALAKLPSGVNKSEAQSVLEQCKNKTGQDAADKAFAILQC 419
           ++    K+A+ NS  T+ + + L  LPS       QS LEQCK    Q+ A +     Q 
Sbjct: 74  IMAISNKNAMNNS--TMEVQIFLNDLPSNDFNHIFQS-LEQCKQSIAQECASRGLQPPQY 130

Query: 420 FHKG 431
           +  G
Sbjct: 131 YVAG 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,186
Number of Sequences: 37544
Number of extensions: 212055
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)