Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_N06
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    29   0.039
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.0  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +1

Query: 232 KVEAAESNGKENGTDEAPEDSPAENGDAEESN-----DASENGDATEKKETGVKRKSV 390
           K+   +   KE   DEA E+   E G+ ++ +     D  E+ D   KKE   K+K++
Sbjct: 212 KLVVEKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTI 269


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 259 KENGTDEAPEDSPAENGDAEESNDASENGDATE 357
           +E G DEA  D   EN  A+E    +  GD  +
Sbjct: 21  EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 259 KENGTDEAPEDSPAENGDAEESNDASENGDATE 357
           +E G DEA  D   EN  A+E    +  GD  +
Sbjct: 21  EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 391 PQISSSHQSLSFLWHHRSQMHRCFLRHHHFQQANLLG 281
           P +++   +   + HH  + H    + HH QQ  + G
Sbjct: 155 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 191


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 391 PQISSSHQSLSFLWHHRSQMHRCFLRHHHFQQANLLG 281
           P +++   +   + HH  + H    + HH QQ  + G
Sbjct: 157 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 193


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 573 CRSGICGCELNSN 535
           C+ G+C  E+NS+
Sbjct: 140 CKKGVCTMEINSD 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,288
Number of Sequences: 336
Number of extensions: 3020
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)