Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_N06
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.008
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 33 0.057
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.17
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 30 0.30
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.30
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.70
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.70
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.93
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.93
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 29 0.93
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.93
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.93
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.93
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.2
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.6
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 3.8
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 3.8
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 27 3.8
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 3.8
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 3.8
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 5.0
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 6.6
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.6
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 6.6
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 6.6
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 6.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 8.7
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 25 8.7
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 8.7
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 130 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAXKVE---AAESNGKENGTDEAPEDSPA 300
++ D + K + + +S EP + VKK K + ++ES + + ++ S +
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
Query: 301 ENGDAEESNDASENGDATEKKETGVK 378
E+ +E + +SE+ + ++E VK
Sbjct: 104 ESSSSESESSSSESSSSESEEEVIVK 129
Score = 32.3 bits (70), Expect = 0.076
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 154 DKKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESND- 330
+KKE + + + + ES + S + E E K T+E E S + D+E S+D
Sbjct: 158 EKKESSSDSSSESSSSESESESSSSESEEEEEVVEK---TEEKKEGSSESSSDSESSSDS 214
Query: 331 ASENGDATEKKET 369
+SE+GD+ ++
Sbjct: 215 SSESGDSDSSSDS 227
Score = 29.9 bits (64), Expect = 0.40
Identities = 18/83 (21%), Positives = 41/83 (49%)
Frame = +1
Query: 139 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAE 318
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 319 ESNDASENGDATEKKETGVKRKS 387
E +E A+E++ + + S
Sbjct: 236 EKKRKAE--PASEERPAKITKPS 256
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.7 bits (71), Expect = 0.057
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 157 KKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSP-AENGDAEE 321
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ EE
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVEE 539
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +1
Query: 175 EEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 354
E +S+E +S S + +++ + + + ++ +DS +++ D+ ES +SE+ D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 184 TSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 363
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Query: 364 ET 369
+
Sbjct: 193 SS 194
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 184 TSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 363
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
Query: 364 ET 369
+
Sbjct: 247 SS 248
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 160 KEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDAS 336
++V ++TS EPK + KSP K + ++ T++ DS +N ++S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAV 1031
Query: 337 ENGDAT 354
+ AT
Sbjct: 1032 DTSTAT 1037
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 238 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 348
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +1
Query: 181 VTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 348
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D E+ +
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNN 224
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 205 SPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 351
+P+K+ PA ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 28.7 bits (61), Expect = 0.93
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 181 VTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 360
V ++E ES + S + E ES +DE+ +S +E+ ++EE +++ E D +E+
Sbjct: 75 VAASEDSESDSESSE--EEEETESEEDSEVSDESESESESES-ESEEESESEEESDESER 131
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 0.93
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 217 KSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKR 381
K P+ K + S+ +NG+D DS + N SN +EN +A ++K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 28.7 bits (61), Expect = 0.93
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 699 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 550
++LL C ++ L+LN+ + L +R + ++ SGICGC
Sbjct: 93 KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 0.93
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 178 EVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 345
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + E G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.7 bits (61), Expect = 0.93
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 181 VTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDA--EESNDASENGDAT 354
++ EP++ K + KVE E+ + +EA ++ ++ +A EE A N T
Sbjct: 381 ISVDEPQKD--SKDDSEKVEK-ETEVERKEENEAEAEAVFDDWEAALEEPEVAENNEVVT 437
Query: 355 EKKETGVKRKSV 390
EKKET +K +V
Sbjct: 438 EKKETDIKSDAV 449
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +1
Query: 181 VTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 360
+++ E K+ PV + + S+ +G E+ SPA + +E S++ +
Sbjct: 342 LSNGEKKQKPVYTNKKKSNRSGTSSISSSGILES---SPATSISVDEPQKDSKDDSEKVE 398
Query: 361 KETGVKRK 384
KET V+RK
Sbjct: 399 KETEVERK 406
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.93
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 187 STEPKESPVKKSPAXKVE-----AAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 351
S P++SPV+ V+ +ESN K +GT+ + +P NG+ EE N+ G
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGN-EEVNNLEPVGQN 232
Query: 352 TEKKE 366
K+E
Sbjct: 233 ESKQE 237
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 244 AESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 396
+ES ++ DE E+ EN D + D +EN + + E G S A+
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 259 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 396
+EN +D E+S + AE A E TE++E K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 384 FPLHTSLFLFCGITVLRCIVAFFGITIFS 298
FP+ +F FC + IV+ G+TIF+
Sbjct: 398 FPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 238 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALD 399
+A S+ +E ++E ED+ E+G +E + E+G+ ++ E +++ D
Sbjct: 954 DADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERKARQEDAKHD 1007
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 163 EVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEE 321
++ PE+ + + PVKK P+ K + A++N E DE + E D+E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = +1
Query: 133 TMADAAVDKKEVAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGD 312
T A+ ++D S++P E+P S K + E++ K+ +E + AE
Sbjct: 333 TEAEQSIDVSSDIGLRSDSSKPNEAPT-SSENIKADQPENSTKQENPEEDMQIKDAEEHS 391
Query: 313 AEESNDASENGDATEKKETGVKRKSV 390
ES A++ E K S+
Sbjct: 392 NLESTPAAQQTSEVEANNHQEKPSSL 417
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 235 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 366
VE + NG + + ++ +DS ++ + ESND S + DA + +
Sbjct: 372 VEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 623 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 516
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 166 VAPEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESN 327
VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 369 SLFLFCGITVLRCIVAFF-GITIFSRRIFWGFIGTILFA 256
++F + C+ FF G TI+ +F G +GT L A
Sbjct: 356 AVFFIFSLFFFLCMRNFFPGFTIYFPALFLGVVGTFLIA 394
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1
Query: 181 VTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE---NGDA 351
+ ++ K SPV + A +N + + +SP + EE+N A + A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586
Query: 352 TEKKETGVKR 381
T +K+ + R
Sbjct: 587 TMEKQYDLHR 596
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +1
Query: 169 APEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 348
A EE + SP + S K + E + ENG + +N D E DA NG
Sbjct: 144 ADEEGSEISVPSSPKRMSFNLKEDMEEGDFDENG------NFIRKNYDPESQYDAWLNGS 197
Query: 349 ATEKKETGVKRKS 387
+ KK R++
Sbjct: 198 VSNKKSIAAAREA 210
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 277 EAPEDSPAENGDAEESNDASENGDATEK 360
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +1
Query: 199 KESPVKKSPAXKVEAAESNGKENG-------TDEAPEDSPAENGDAEESNDA-SENGDAT 354
K +PV A VE AE NG E+ + E ED A+ + +A E +
Sbjct: 403 KPAPVVAPAAPTVE-AEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKK 461
Query: 355 EKKETGVKRK 384
EKKE K+K
Sbjct: 462 EKKEKKEKKK 471
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 196 PKES-PVKKSPAXKVEAAESNGKENGTDEAPEDSPAENG-DAEESNDASENGDAT-EKKE 366
PK S P +PA V A +S NG E+ ENG D SND+ +G E+ E
Sbjct: 396 PKSSFPTSSTPA-SVGAEKSEETSNGNKSEQEEK--ENGNDETRSNDSLVSGKGKGEENE 452
Query: 367 TGV 375
V
Sbjct: 453 DSV 455
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 199 KESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAENGDAEESN 327
+E +S + EA E NG + S EN D+EE N
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEEN 3981
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 292 SPAENGDAEESNDASENGDAT 354
SP NGD E +ENG+ T
Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +1
Query: 172 PEEVTSTEPKESPVKKSPAXKVEAAESNGKENGTDEAPEDSPAE---NGDAEESND-ASE 339
P E +TE + + +S + ++ S + D DSP + N + +D SE
Sbjct: 351 PSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESE 410
Query: 340 NG 345
NG
Sbjct: 411 NG 412
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -3
Query: 349 HHRSQMHRCFLR--HHHFQQANLLGL--HRYHSL-CHY 251
HH SQ ++C LR HH N +G H++ L C Y
Sbjct: 111 HHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFY 148
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 286 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 387
E+ E+ E NDA+E G + +K+ K+KS
Sbjct: 22 ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,759
Number of Sequences: 5004
Number of extensions: 47132
Number of successful extensions: 221
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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