Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_M22
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.1
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 28 1.1
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.0
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 3.5
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 3.5
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 26 4.6
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 26 4.6
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 6.1
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 25 6.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 8.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 8.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/99 (20%), Positives = 41/99 (41%)
Frame = +1
Query: 274 SEEVIEEHSLNTDTNNLQIEESGKKKPRGISSVTLRSTNKNKDNQHLPNVGRTGISPNTH 453
SE E S + + ++ KK+ SS + S + + + + ++
Sbjct: 110 SESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSE 169
Query: 454 SIMKTKQTKDEQDKSIDEETVIEPKTRARKKASDPTEDD 570
S +++ +S +EE V+E KT +K+ S + D
Sbjct: 170 SSSSESESESSSSESEEEEEVVE-KTEEKKEGSSESSSD 207
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -2
Query: 457 WNVYWEIFPFSRH*VDVDCLC--FYWS--IGE*PTRCP*VFFYRTL 332
W ++W +FP H D LC F+++ + T CP + Y T+
Sbjct: 225 WLLHWSLFPLFNHANGCDTLCDLFFYTPYLNTIQTSCPWLLRYLTV 270
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 379 RSTNKNKDNQHLPNVGRTGIS--PNTHSIMKTKQTKDEQDKSIDEETVIEPKTRARKKAS 552
RS + L NV T + PN+ + +DE S+D +++ P KKA
Sbjct: 384 RSVKTAAELASLQNVTETTDNEIPNSPDFLDAASEEDEHIPSLDSSSLLTPLALPNKKAF 443
Query: 553 DPTE 564
P +
Sbjct: 444 QPVK 447
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 445 NTHSIMKTKQTKDEQDKSIDEETVIEPKTRARKKASDPTEDDKT 576
NT++ TK+E + ET E K + A++P+E T
Sbjct: 19 NTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTST 62
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 368 RSLSDRPIKTKTINIYLMS-GEREYLPIHIPS*KLS 472
R++ RP +I +S G + +LP+H+P KLS
Sbjct: 215 RTIPGRPENGGNCDIKNLSRGSKVFLPVHVPGAKLS 250
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 534 PRLRFYHCFLINTLVLFIFSLLSF 463
P++RF L++ V+F FSL+ F
Sbjct: 241 PKIRFSRFILLSVTVVFTFSLILF 264
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 4.6
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Frame = +1
Query: 376 LRSTNKNKDNQHLPN-VGRTGISPNTHSIMKTKQTKDEQDKSI---------DEETVIEP 525
L T KN+++Q LPN + N+ S M+ ++ + KS +ET E
Sbjct: 427 LNDTTKNQNDQILPNETSESDDDANSISSMENEEERTSDSKSSAKQGKGNGRAKETPEEK 486
Query: 526 KTRARKKASDPTEDDKT 576
+ R +K D E K+
Sbjct: 487 RARKKKTKEDKAEKRKS 503
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 6.1
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = +1
Query: 280 EVIEEHSLNTDTNNLQIEESGKKKPRGISSVTLRSTNKNKDNQHLPNVGRTGISPNTHSI 459
+V E +TDT + S KKK R + +ST +N + + IS T I
Sbjct: 195 DVPEVSRPSTDTIGVSSALSKKKKKRNRKNQKKKSTKQNIEATTENDALSESIS--TPDI 252
Query: 460 MKTKQTKDEQDKSIDEETVIEPKTRARK 543
K Q+ +D +++TV + K R+
Sbjct: 253 QKVAQS---EDVDAEQDTVADSKEEERR 277
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/82 (19%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 328 IEESGKKKPRGISSVTLRSTNKNKDNQHLPNVGRTGIS-PNTHSIMKTKQTKDEQDKSID 504
+E+ +K + ++ + + KD+ +L G T + ++K++ D Q++ +
Sbjct: 45 LEKKIRKLMFAMKALLEETKHSTKDDVNLVIPGSTWSHIEGVYEMLKSRH--DRQNEPVI 102
Query: 505 EETVIEPKTRARKKASDPTEDD 570
EE PK + ++ ++PT ++
Sbjct: 103 EEPSSHPKNQKNQENNEPTSEE 124
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 8.0
Identities = 12/54 (22%), Positives = 22/54 (40%)
Frame = +1
Query: 385 TNKNKDNQHLPNVGRTGISPNTHSIMKTKQTKDEQDKSIDEETVIEPKTRARKK 546
+N+ DN P+V + + N K + + ++ E V+ RKK
Sbjct: 1191 SNRKADNNGTPSVNNSFTTANNDECSKENSQIEPEGQTASREGVLSTPRSTRKK 1244
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 337 SGKKKPRGISSVT--LRSTNKNKDNQHLPNVGRTGISPNTHSIMKTKQTKDEQDKSIDE 507
+G +P+G T L+S+NKN D + + PN++ + + ++ SI +
Sbjct: 59 NGSYQPKGSLEFTPLLQSSNKNSDKYNGSLGDKGSFDPNSYGLSAISKQATQEALSISQ 117
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 367 SVTLRSTNKNKDNQHLPNVGRTGISPNTHSIMKTKQTKDEQDKSIDEET 513
+++ STN+ + H P V T S +T S+ K S++ E+
Sbjct: 803 TISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLES 851
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,550
Number of Sequences: 5004
Number of extensions: 49654
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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