Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_M22
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994... 33 0.22
11_06_0710 - 26492093-26493460 31 0.88
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 29 2.0
09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248... 29 2.0
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 29 2.0
07_01_0569 - 4223494-4224261,4224770-4225090 29 3.5
11_06_0289 - 21969248-21973516 28 4.7
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269 27 8.2
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 27 8.2
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 27 8.2
03_03_0110 - 14523712-14525183,14525482-14525749 27 8.2
>10_08_0460 - 18098187-18098248,18098331-18098399,18098468-18099434,
18100089-18100808,18100942-18101031,18101076-18101138,
18101223-18101366,18101471-18101527,18101606-18101680,
18101757-18101836,18101937-18102050,18102166-18102258,
18102470-18102553,18102812-18102859,18105207-18105337,
18105903-18106135
Length = 1009
Score = 32.7 bits (71), Expect = 0.22
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Frame = +1
Query: 250 IENDC-DSCSEEVIEEHSL-NTDTNNLQIEESGKKKPRGISSVTLRSTNKNKDNQHLPNV 423
++ND EE+IEE + + D N + + K+ R + + S K+KD QH
Sbjct: 908 VQNDTVQHAEEEIIEEVEIEDPDLANTKGRKP-KRYRRIVEKMIETSKRKSKDEQHTTET 966
Query: 424 GRTGIS--PNTHSIMKT-KQTKDEQDKSIDEETVIEPKTRARKKAS 552
+ I+ N MKT K TK + + EET PK + K S
Sbjct: 967 RTSEITNIGNKQEEMKTSKTTKRRKKNNTQEET---PKEKLHAKTS 1009
>11_06_0710 - 26492093-26493460
Length = 455
Score = 30.7 bits (66), Expect = 0.88
Identities = 27/109 (24%), Positives = 50/109 (45%)
Frame = +1
Query: 247 KIENDCDSCSEEVIEEHSLNTDTNNLQIEESGKKKPRGISSVTLRSTNKNKDNQHLPNVG 426
K +D D +E+ ++ S N+D + ++S KKKP+ +K K + +
Sbjct: 147 KSSDDDDDDAEKKSKKKSKNSDDDEDDKKKS-KKKPKNPDD---DEDDKKKSKKKSSDED 202
Query: 427 RTGISPNTHSIMKTKQTKDEQDKSIDEETVIEPKTRARKKASDPTEDDK 573
G K K+ K + KS DEE +PK +++ K+ + D++
Sbjct: 203 NDGA--------KKKKKKKSKGKSSDEEDDEKPKKKSKSKSKSSSSDEE 243
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 334 ESGKKKPRGISSVTLRSTNKNKDNQHLPNVGRTGI-SPNTHSIMKTK-QTKDEQDKSIDE 507
E GK K + ++ L+ +KN+D+ LP+ ++G+ P T + K K + + + +++E
Sbjct: 526 EVGKSKSKSVNERPLKKASKNRDDVKLPS--QSGLEEPQTSNRSKRKRKVRKNRSTTVNE 583
Query: 508 ETV 516
V
Sbjct: 584 RPV 586
>09_04_0246 -
16024454-16024529,16024635-16024720,16024805-16024894,
16025349-16025435,16026112-16026229,16026852-16026982,
16027619-16027909,16028000-16028124,16028209-16028334,
16028452-16028487,16028599-16028902
Length = 489
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 265 DSCSEEVIEEHSLNTDTNNLQIEESGKKKPRGISSVTLRSTNKNK 399
D C +++E+ +L+ D N + + K GIS T R+ N +K
Sbjct: 413 DRCVTQMLEKQNLSEDCNQMISLKFSVKTRGGISEATTRTINTDK 457
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 463 KTKQTKDEQDKSIDEETVIEPKTRARKKASDPTEDDKT 576
K + + DE+D S +E + EPK +KKA + + ++ +
Sbjct: 230 KKESSSDEEDDSSEESSDDEPKQPQQKKAQEESSEESS 267
>07_01_0569 - 4223494-4224261,4224770-4225090
Length = 362
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 253 ENDCDSCSEEV-IEEHSLNTDTNNLQIEES 339
EN+C S V EHS+NTDT ++ + S
Sbjct: 251 ENECSVASCSVNFSEHSMNTDTQSVGVRNS 280
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +1
Query: 379 RSTNKNKDNQHLPNVGRTGISPNTHSIMKTKQTKDEQDKSIDEETVIEPKTRARKKASDP 558
++ NK D LP + +K DE+ K ++E+T +E +T R+
Sbjct: 385 QAKNKAVDTHKLPE-WNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAVRQGGGGE 443
Query: 559 TEDDK 573
E+D+
Sbjct: 444 REEDE 448
>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
Length = 658
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 188 ISAITRLHNMPSGQFIRWNLEKPQ*T-VIYIHNA 90
+ A+TR+ ++P G+ + + EKP T V+Y+ A
Sbjct: 237 LQAVTRVKDLPPGEDLAFKSEKPPGTSVLYVDKA 270
>08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 460 MKTKQTKDEQDKSIDEETVIEPKTRARKKASDPTED 567
M+ K K +QD + T+ P+ R +K DP D
Sbjct: 1018 MEEKHQKSDQDFHFSDSTMAIPRERKQKGEVDPAAD 1053
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 334 ESGKKKPRGISSVTLRSTNKNKDNQHLPNVGRTGISPNTHSIMKTKQTKDEQDKSIDEET 513
++G K+ SS + T+ K++ H+P S H+ TKQ + IDE+
Sbjct: 862 KAGNKQSSLPSSSPMSPTSGKKESVHVP------FSTPPHT---TKQAILPRTGWIDEQK 912
Query: 514 VIEPKTRARKKASD 555
V PK + KA+D
Sbjct: 913 VASPKAESNTKAAD 926
>03_03_0110 - 14523712-14525183,14525482-14525749
Length = 579
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +1
Query: 343 KKKPRGISSVTLRSTNKNKDNQHLPNVGRTGISPNTHSIMKTKQTKDEQDKSIDEETVIE 522
+ PRG+ S T + H P+ + +S N + + QT + ++++
Sbjct: 85 RSAPRGVVSDTEIPVSVFTGKPHFPSSLQQRLSINCVLVFVSIQTAQAEARNLERAERER 144
Query: 523 PKTRARKKASDPTED 567
K RAR A D E+
Sbjct: 145 EKERARSAAMDEWEE 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,484
Number of Sequences: 37544
Number of extensions: 278735
Number of successful extensions: 711
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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