Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M21
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    43   3e-05
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    30   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   2.1  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    27   2.8  

>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 24/99 (24%), Positives = 40/99 (40%)
 Frame = +3

Query: 306 DTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXS 485
           D E++D   PS+K +  +  G++ +DVA C  RG+++ + P                   
Sbjct: 70  DKEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGAL 129

Query: 486 RRVPEAIHEAKTGGWVSWAPTWMTGPXLAGATVGIVGFG 602
           R   + I E       +W           G T+GI+G G
Sbjct: 130 RGFNQGIFELHKN---NWNANCKPSHDPEGKTLGILGLG 165


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 23/97 (23%), Positives = 36/97 (37%)
 Frame = +3

Query: 312 ELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXSRR 491
           E+L    P+ K+  T + G++++DV    + GV +  TP+                  R 
Sbjct: 75  EMLGPLLPTCKLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRG 134

Query: 492 VPEAIHEAKTGGWVSWAPTWMTGPXLAGATVGIVGFG 602
             EA    + G    W           G  VGI+G G
Sbjct: 135 AREAEQSLRLG---KWRQNLSLTDDPYGKRVGIIGMG 168


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -3

Query: 586 PTVAPASXGPVIQVGA---HETQPPVLASCIASGTRRDVAKSR-ARVNSAVASVKTSGVY 419
           P  APA   PV  +      + +  ++AS  ASG   D+ KSR    + +VAS KTS   
Sbjct: 478 PAPAPAPAAPVASIAELPQQDGRANLMASIRASGGM-DLLKSRKVSASPSVASTKTSNP- 535

Query: 418 PIRTP 404
           P+  P
Sbjct: 536 PVEAP 540


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/94 (24%), Positives = 47/94 (50%)
 Frame = -3

Query: 520 VLASCIASGTRRDVAKSRARVNSAVASVKTSGVYPIRTPLFLHSATSI*SWPTEIVATTF 341
           +L+S  +S +   ++ S +  +S  +S  TS    I + +   S+++I S PT   ++  
Sbjct: 579 ILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSI--SSSSTILSSPTPSTSSLM 636

Query: 340 KLGPAASNSSVSILSVKEQ*IPLTPATSFNNSAL 239
               +  + S SILS     IP++ + S  +S++
Sbjct: 637 ISSSSIISGSSSILSSSISTIPISSSLSTYSSSV 670


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 92  SWWYCYCKEHECKRTISNIRDEV--*YAREWST 184
           S+ YC C++ E +++I +I +E+   Y + W T
Sbjct: 159 SFCYCSCEQKEWQQSIKSIEEELVEKYQQSWKT 191


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 189 LKDQCDVNLWNQPSPVPRAELLKEVAGVNGIYCSLTDKIDTELLDAA 329
           + D C +NLW+  +      LL+EVAG N     L +K+ T  ++ A
Sbjct: 201 ISDVCGMNLWDIQNEKFDIRLLEEVAG-NSKGPDLANKLGTVEINGA 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,971
Number of Sequences: 5004
Number of extensions: 53187
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)