Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_M21
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010 67 1e-11
04_01_0035 - 433848-434372,434905-435381 52 5e-07
04_01_0036 + 436592-437572 45 5e-05
04_01_0033 + 391565-391974,393484-393520,394959-395483 41 7e-04
04_01_0037 + 444239-444667,444817-444825 38 0.008
04_01_0038 + 446314-446787,446829-447350 36 0.025
02_01_0012 - 80014-80104,80190-80308,80480-80524,80726-80911,810... 34 0.100
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89... 32 0.30
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223 29 2.8
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 29 3.7
12_02_0923 - 24392892-24394148 28 5.0
10_08_0153 - 15240707-15241019,15241269-15241723 28 6.5
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037 28 6.5
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 28 6.5
07_01_0313 + 2216498-2216953 28 6.5
>01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010
Length = 454
Score = 66.9 bits (156), Expect = 1e-11
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Frame = +3
Query: 183 QLLKDQCDV-NLWNQPSPVPRAELLKEVAGVNGIYCSLTDKIDTELLDAAGPSLKVVATI 359
Q L +C + LW P+ L + + + +D ++DA PSL++V++
Sbjct: 18 QELDRRCRLFRLWESPADRRDDYLRAHASSIRAVVPYALQGVDAAMIDAL-PSLEIVSSF 76
Query: 360 SVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSW 539
SVG D +D+ C +RGVR+ TPDV R++P+A + G W S
Sbjct: 77 SVGIDRVDLDACLRRGVRVTNTPDVLTDDVADLAVGLAIAALRKIPQADRYVRAGKWKSK 136
Query: 540 APTWMTGPXLAGATVGIVGFG 602
+T +G VGI+G G
Sbjct: 137 GDFTLT-TRFSGKRVGILGLG 156
>04_01_0035 - 433848-434372,434905-435381
Length = 333
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/101 (31%), Positives = 45/101 (44%)
Frame = +3
Query: 300 KIDTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXX 479
+++ LDA PSL V T G DHID+AEC +RGV + V
Sbjct: 73 QVNAAFLDAV-PSLGCVVTTGAGVDHIDLAECARRGVAVAGAGTVFSTDVADHAVGLLVD 131
Query: 480 XSRRVPEAIHEAKTGGWVSWAPTWMTGPXLAGATVGIVGFG 602
RR+ + + G W + + G L+G VGI+G G
Sbjct: 132 VLRRISASDRYVRRGLWAA-RGDYPLGSKLSGKHVGIIGLG 171
>04_01_0036 + 436592-437572
Length = 326
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +3
Query: 303 IDTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRI 416
+ ELLDA PSL+ + T+S G +HID+ EC +RGV++
Sbjct: 63 VGAELLDAV-PSLRCIITVSAGTNHIDLRECARRGVQV 99
>04_01_0033 + 391565-391974,393484-393520,394959-395483
Length = 323
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 300 KIDTELLDAAGPSLKVVATISVGHDHIDVAECKKRGV 410
+ D L DA PSL+ V + + G DHID+AEC +RGV
Sbjct: 69 RADAALFDAV-PSLRCVVSTAAGVDHIDLAECARRGV 104
>04_01_0037 + 444239-444667,444817-444825
Length = 145
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 333 PSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXSRRVPEAIHE 512
P L++V S G DHID+ C++RG+ + +V RRV A
Sbjct: 67 PKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFAPDVADYAVGLVVAVLRRVAAAEAY 126
Query: 513 AKTGGWVS 536
+ G W +
Sbjct: 127 LRRGRWAA 134
>04_01_0038 + 446314-446787,446829-447350
Length = 331
Score = 35.9 bits (79), Expect = 0.025
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Frame = +3
Query: 333 PSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXSRRVPEAIHE 512
P+L++V S G DHI++ C++RG+ + + RRV A
Sbjct: 70 PALELVVASSAGVDHINLGACRRRGIAVTNAQNAFSADAADYAVGLLVAVLRRVAAADAY 129
Query: 513 AKTGGWVSWAPTW-MTGPXLA----------GATVGIVGFG 602
+ G W + A + + LA G VGIVG G
Sbjct: 130 VRRGAWAAAAGDYPLASKVLADLGGKKIEVSGKRVGIVGLG 170
>02_01_0012 -
80014-80104,80190-80308,80480-80524,80726-80911,
81027-81101,81213-81304,81731-81803,81923-82004,
82096-82217,82249-82440,82682-82804
Length = 399
Score = 33.9 bits (74), Expect = 0.100
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 2/159 (1%)
Frame = +3
Query: 132 GRYQIYVTRSDMPESGVQLLKDQ-CDVNLWNQPSPVPRAELLKEVAGVNGIYCSLT-DKI 305
G+Y++ T+S ++LL D C + L + V LK G ++ + +
Sbjct: 14 GKYRVVSTKSMPGTRWIRLLADNDCRLELTEEWGEV-LFSALKRAGGTAFSNMAVGYNNV 72
Query: 306 DTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYTPDVXXXXXXXXXXXXXXXXS 485
D E + G I+VG+ + A R+ Y V +
Sbjct: 73 DVEAANRNG--------IAVGNTPVSSAALCFLISRLSYWMGVLTETTAELAASLSLAAA 124
Query: 486 RRVPEAIHEAKTGGWVSWAPTWMTGPXLAGATVGIVGFG 602
RR+ EA + G + W P G L G TVG++G G
Sbjct: 125 RRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAG 163
>11_01_0115 -
889159-889921,889962-890053,890141-890359,890738-891835
Length = 723
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 601 PNPTMPTVAPASXGPVIQVGAH-ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 425
P P + A S G VIQ G+H ++ PP++ S + + D + R+ A SV +
Sbjct: 121 PEPLVARPAACSRGYVIQPGSHSDSAPPLMPSSSGNAVQSDATDAVKRIVLAPKSVSEAA 180
Query: 424 VYP 416
P
Sbjct: 181 PPP 183
>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
Length = 437
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 515 QNRWLGFMGTHLDDRTXTGRCHCW 586
Q W F+ +H+DD TG H W
Sbjct: 41 QGGWYNFLHSHVDDIAATGVTHVW 64
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 601 PNPTMPTVAPASXGPVIQVGAH-ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 425
P P + A S G VIQ G+H + PP++ S + + D + R A +V +
Sbjct: 121 PEPLVARPAACSRGYVIQPGSHSDAAPPLMPSSSGNAAQSDATNAINRTVLAHKNVPEAA 180
Query: 424 VYP 416
P
Sbjct: 181 PPP 183
>12_02_0923 - 24392892-24394148
Length = 418
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 345 VVATISVGHDHIDVAECKKRGV 410
+VA ++ G H+ VA CK+RGV
Sbjct: 169 LVAVVTSGGRHVAVAPCKRRGV 190
>10_08_0153 - 15240707-15241019,15241269-15241723
Length = 255
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 513 AKTGGWVSWAPTWMTGPXLAGATVGIVGFG 602
A GGWVS T+ G +G G G+G
Sbjct: 22 AAAGGWVSGTATFYGGKDASGTMGGACGYG 51
>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
Length = 438
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 515 QNRWLGFMGTHLDDRTXTGRCHCW 586
Q W F+ H+DD TG H W
Sbjct: 41 QGGWYNFLHGHVDDIAATGVTHVW 64
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -3
Query: 532 TQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSGVYPIRTPLFLH 392
T PP+ S IA T ++ SRAR A+ SV+T+ V LF H
Sbjct: 1201 TSPPLDESSIA--TIVEMGFSRARAEEALRSVRTNSVEMATDWLFSH 1245
>07_01_0313 + 2216498-2216953
Length = 151
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 601 PNPTMPTVAPASXGPVIQVGAHETQPPVLA 512
P PT+PT+ PA P I T PP+ A
Sbjct: 50 PKPTIPTIVPAVTLPPIPAVPKVTLPPMPA 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,474
Number of Sequences: 37544
Number of extensions: 373140
Number of successful extensions: 883
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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