Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M21
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    30   1.1  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    30   1.1  
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    29   1.9  
Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical ...    29   3.4  
U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 33/119 (27%), Positives = 46/119 (38%)
 Frame = +3

Query: 246 ELLKEVAGVNGIYCSLTDKIDTELLDAAGPSLKVVATISVGHDHIDVAECKKRGVRIGYT 425
           ELL  +   + +      KI  ELL A+   LK+V     G D+IDV       + +  T
Sbjct: 39  ELLVTLPQHDAVIVRSATKITAELLAASAGKLKLVGRAGTGVDNIDVPAASANKILVMNT 98

Query: 426 PDVXXXXXXXXXXXXXXXXSRRVPEAIHEAKTGGWVSWAPTWMTGPXLAGATVGIVGFG 602
           P                  SR VP+A    K G    WA     G  + G T+ ++G G
Sbjct: 99  PQANSRSAAELTCTLILSLSRHVPQAAASMKAG---KWARKDFMGEEVYGRTLAVLGLG 154


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 601 PNPTMPTVAPASXGPVIQVGAHETQPPVLASCIASGTRRD-VAKSRARVNSAVASVKTSG 425
           P P   T+ P         G++  QP VL SC    T  +  AK  A V + +A ++ +G
Sbjct: 161 PPPIQKTMQPIEVKIEDSEGSNTAQPSVLPSCGGGETNVERAAKREAHVLARIAELRKNG 220

Query: 424 VY 419
           ++
Sbjct: 221 LW 222


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 601 PNPTMPTVAPASXGPVIQVGAHETQPPVLASCIASGTRRD-VAKSRARVNSAVASVKTSG 425
           P P   T+ P         G++  QP VL SC    T  +  AK  A V + +A ++ +G
Sbjct: 161 PPPIQKTMQPIEVKIEDSEGSNTAQPSVLPSCGGGETNVERAAKREAHVLARIAELRKNG 220

Query: 424 VY 419
           ++
Sbjct: 221 LW 222


>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
           protein K11D9.2b protein.
          Length = 1004

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 535 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 425
           E  P V+ +C+A GTRR +AK  A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345


>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
           protein K11D9.2a protein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 535 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 425
           E  P V+ +C+A GTRR +AK  A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 535 ETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTSG 425
           E  P V+ +C+A GTRR +AK  A V S + SV+T G
Sbjct: 311 EGLPAVITTCLALGTRR-MAKKNAIVRS-LPSVETLG 345


>Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 441 QSKHPECTQYGHPFSCTLPHRYD 373
           + KHP C  Y H   CTLP  YD
Sbjct: 349 EDKHPRCDIYSHNGFCTLPF-YD 370


>Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical
           protein F58B3.4 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 78  TSXLFRGGIAIVRNMSAKGRYQIYVTRSDMPESGVQLLKDQCDVNLWNQPSPV 236
           +S  F+G + + +    K +    V  +  PE  VQ LK Q D   WN+   V
Sbjct: 549 SSKKFKGSLLVTKQAEQKSKGSSTVIETKKPEDLVQKLKKQAD--KWNKKKSV 599


>AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 441 QSKHPECTQYGHPFSCTLPHRYD 373
           + KHP C  Y H   CTLP  YD
Sbjct: 349 EDKHPRCDIYSHNGFCTLPF-YD 370


>U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical
           protein ZK354.8 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 601 PNPTMPTVAPASXGPVIQVGAHETQPPVLAS 509
           P P  P VAP    P +   A   QPPV+ S
Sbjct: 97  PPPPPPPVAPHQPPPQLATSAQPPQPPVINS 127


>Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical
           protein W06G6.3 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 526 PPVLASCIASGTRRDVAKSRARVNSAVASVKTSGVY 419
           PP    CIA+  R  V K + ++NS V +V +  ++
Sbjct: 282 PPFFKFCIANPGRMAVRKIKGKMNSEVTAVTSYSIH 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,325
Number of Sequences: 27780
Number of extensions: 310178
Number of successful extensions: 724
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)