Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M19
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   4.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   6.2  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/55 (23%), Positives = 21/55 (38%)
 Frame = +2

Query: 68  TLYFVQVQTRAVLGMNFELESSLLTQSGPVSERMEKWTEAQRKGQKIDIDVYGKP 232
           T+  +    R  L  +F + S L   +    +  E   E +      D+DV G P
Sbjct: 7   TILVIPTMARTPLKSSFSISSILPETALEAPKSPENHPETELSDSDCDLDVTGTP 61


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 141 PRADPSQRGWRNGRKPRGKVRKST*TFTGNHQRNNSGNW 257
           P+   +Q+ ++  R P    RK +  F    + NN G W
Sbjct: 348 PQNAKTQKAFQVKRVPDPSKRKGSYIFRLPDENNNGGFW 386


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 275 SKELQDNLHELETAVRIADVENQ---AMNPTAPMLDYSEDH 388
           +KEL D  H+L+T + I     +   A+N     LD S D+
Sbjct: 25  NKELWDQFHDLQTEMIITKSGRRMFPALNLKITDLDPSADY 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,182
Number of Sequences: 336
Number of extensions: 2151
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)