Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_M18
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 29 4.1
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7) 29 4.1
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 29 4.1
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 29 4.1
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 29 4.1
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) 28 5.5
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 28 7.2
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051) 27 9.6
SB_7220| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44) 27 9.6
SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34) 27 9.6
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 146 QXSDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 271
Q D MYEV+I + +RK+ R+ D E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802
>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
Length = 245
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 288 GFVGIAALSPLDARVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKSKMERNSI 452
G G L P+ S G +P+L Q S + +P +PG+ + R ++
Sbjct: 93 GVPGAPTLVPIQRPAPSVPSPTGRVPHLDQIPHVPSGPSSLPSSPGEPLISRGTV 147
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 565 YXCGMSCEGNVAVVRSAVIEFQRTRGDRSK 476
Y C SCE N + +AV F +TR R+K
Sbjct: 225 YLCHESCEENAGLFETAVGWFSQTRWQRTK 254
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 321 DARVKLFHSYPGLIPNLSQFTTSESAQA-GVPQAPGKSKMERNSILRTG*SISLDLSPLV 497
+ R K+ G + L Q++ + + G+PQ K +R I I + ++P
Sbjct: 93 EERGKIAVEVDGKLDGLEQYSRRNNIRIDGIPQTEEKEDTDRLIIETIKAKIGIVIAPAD 152
Query: 498 LWNSITADRTTATFPSQLI 554
+W S + + P Q+I
Sbjct: 153 IWRSHRVGHSKGSTPRQII 171
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 369 LSQFTTSESAQAGVPQAPGK-SKMERNS 449
L +FT + +++ G+P PGK S++ +NS
Sbjct: 448 LQEFTQTHASKGGIPSTPGKTSEVSKNS 475
>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
Length = 225
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 236 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 388
+ I + GI + + FWV + S + G I W+DP+P V YY+
Sbjct: 1 LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50
>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 140 GPQXSDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 277
GP + +G W S R +T P KV + PGI NG Y
Sbjct: 84 GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 228 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 356
P ++ K P L +G I+ GF+G ++AL ++LF G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/63 (26%), Positives = 23/63 (36%)
Frame = -1
Query: 510 SNSKEPEATGPNLYSNLSGVSNSAPSSIFQEXXXXXXXXXXXXXTGKGSGSDQDMNGIAS 331
SNS + N SN S SNS+ +S S S+ + N +S
Sbjct: 163 SNSSSSSNSSSNSNSNSSSSSNSSSNSNSSSNSSSSSNSSSNSSRSSSSSSNSNSNSSSS 222
Query: 330 PSR 322
SR
Sbjct: 223 SSR 225
>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
Length = 575
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 167 EVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPF 346
+ + G +AKS+ + +P+K +IES LN + + +I AG + +A P
Sbjct: 247 QCQLAGTRSAKSIYFGSYYRPNKSDIESLDELNSSLLKMGTTLHKNNVILAG-DFDA-PD 304
Query: 347 ISWSDPE 367
I W +PE
Sbjct: 305 IDWVNPE 311
>SB_7220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 557 RDEL*GKRGSCAVRGNRIPKNQRRQVQTYTLTCPEYRIPLHL 432
R + G R AV G+ K Q T TCP+Y+ PLH+
Sbjct: 49 RGQTRGPREYEAVGGSGAEKGGEGQYAELTSTCPDYQ-PLHI 89
>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
Length = 950
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 188 GNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVR 295
GNA VI P+ +E E PG L + R W R
Sbjct: 784 GNAADVIDGAGAPPEGLEQEEPGPLRTAQSREAWTR 819
>SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)
Length = 240
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 299 DSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTG 403
D G + G E I F+ WS + F VCTG
Sbjct: 200 DKGNVKMGNELSDISFVLWSVEQEFASNAGAVCTG 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,950,372
Number of Sequences: 59808
Number of extensions: 445118
Number of successful extensions: 1171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -