Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M16
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   1.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.5  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   7.3  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    21   9.7  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 477 YSWRCGF*KMKNGNHLYSQRQTLIL--QIHFSQLLRHSGNFMMIQWMCI 617
           Y W     + K G   Y++ QTL L  + HF++ L       +   +C+
Sbjct: 233 YPWMRSQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 281


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 477 YSWRCGF*KMKNGNHLYSQRQTLIL--QIHFSQLLRHSGNFMMIQWMCI 617
           Y W     + K G   Y++ QTL L  + HF++ L       +   +C+
Sbjct: 235 YPWMRSQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 283


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 515 KP-PVFPETNFNSADTFLPIAKTLRELYDDPVDVYWF 622
           KP P+ P+  FN      P  +     +  P+D+Y F
Sbjct: 238 KPTPLVPQQGFNMERLLAPSTEVSAPFFRQPLDLYNF 274


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 13  ARMAHFSQTXTKFLXAFSSRRSGPSFIIPP 102
           +R+   S+    +     SRR GP+F + P
Sbjct: 398 SRVLDLSKPGCSYTGEQKSRRKGPAFKVDP 427


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 390 YCSVRCFITYSY 355
           Y SV C++TY++
Sbjct: 142 YLSVTCYVTYAW 153


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 ILPVYPDSYEYVMKQRTEQYQD 397
           IL VYP+  E V ++  + +QD
Sbjct: 11  ILGVYPEIQEKVYQELRDIFQD 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,576
Number of Sequences: 336
Number of extensions: 3256
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)