Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M16
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   3.4  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    27   3.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   4.5  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   4.5  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   6.0  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   6.0  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   7.9  

>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
 Frame = +2

Query: 356 YEYV-MKQRTEQYQDLLYAVEKLQLIEPSEIYDGSGTPQSKVF-----LEMWVLENEEWK 517
           Y ++ + +RTE+  D + +   L+LI+  ++Y G G    K+F     ++  V+   EW 
Sbjct: 349 YSWIDVAERTEKVYDSICSENNLRLIDRLKLYYGCGQWAGKLFCLLIAIDYLVMVLLEW- 407

Query: 518 PPVFPETNFNSA-DTFLPIAKTLRELYDDPVDVYWFSKRFTEVVKNMXKD 664
             ++P ++ + A D      K  ++ +D+ + V    K+ T++     KD
Sbjct: 408 --IWPASDIDPAVDRVSSTFKISKQNFDESL-VLTDPKKKTKIKTACLKD 454


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 443 IYDGSGTPQSKVF--LEMWVLENEEWKPPVFPETNFNSADTFLPIAKTLRELYDDPVD 610
           +   SG+ Q  +F  LE+  +    +  P FP+T+ N+ +TF+   + +  +   P+D
Sbjct: 477 VIGSSGSAQLAIFFILEVANVVAYAYVRPHFPQTSMNTLNTFISTMRLITVILMIPLD 534


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 362 YVMKQRTEQYQD--LLYAVEKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEEWKP-PVFP 532
           Y++KQ+ E YQ   LL  +E++++I+ S I  GS +P   V L      N+   P  + P
Sbjct: 156 YMLKQQWEDYQKLLLLQRLEQMKVIKDSGI--GSFSPSVDVQLGFNPENNDSITPGTILP 213

Query: 533 ET 538
            T
Sbjct: 214 ST 215


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 440 EIYD-GSGTPQSKVFLEMWVLENEEWKPPVFPETNFNSADTFLPIAKTLRELY 595
           +I+D G     SKVF +M +   E++KPP        ++D+ L     L +++
Sbjct: 839 KIHDKGKKVNSSKVFEKMGIASMEKYKPPQESNVTKTNSDSTLGDDSVLDDIF 891


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -2

Query: 565 EKCICRIKVCLWEYRWFPFFIF 500
           + C C ++  L+  R+FP++++
Sbjct: 90  QSCACMVRTLLYGKRFFPYYVY 111


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 524 VFPETNFNSADTFLPIAKTLRELYDDP 604
           VFP T   S+ T +PIA   + L + P
Sbjct: 18  VFPSTRIESSRTIVPIASIYKPLNERP 44


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -2

Query: 562 KCICR------IKVCLWEYRWFPFFIF*NPHLQEYFAL 467
           +CIC       ++VCL  + WF FFI  +P  Q  F++
Sbjct: 233 RCICSRTKLHLVQVCL--FCWFSFFILNHPVKQRIFSI 268


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 401  LYAVEKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEE 511
            L AV K  L+ P + Y     P+S+  L  WV++  E
Sbjct: 955  LKAVAKKYLVNPKKSYTAVLGPKSEKQLPTWVIDKFE 991


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,602
Number of Sequences: 5004
Number of extensions: 53973
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)