Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M16
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467...    29   3.5  
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    29   3.5  
06_01_1183 + 10157813-10159909                                         29   3.5  
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867...    29   4.7  
10_07_0031 + 12051846-12052059,12052360-12052410,12053514-120535...    28   6.2  
08_01_0537 + 4666488-4666870,4667706-4667850,4668299-4668392,466...    28   8.2  
04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174     28   8.2  

>09_04_0174 +
           15346123-15346207,15346350-15346502,15346623-15346759,
           15346856-15347005,15347405-15347506,15347832-15347996,
           15348402-15348499,15348704-15348827,15349056-15349145,
           15349555-15349599,15350438-15350833
          Length = 514

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 320 VLLDILPVYPDSYEYVMKQRTEQYQDLLYAVEKLQLI 430
           V LD L VY   Y+Y +   +E  Q L+Y + K  L+
Sbjct: 87  VKLDDLQVYGFDYDYTLSHYSEHLQCLIYDLAKKHLV 123


>06_03_1208 - 28422941-28423139,28423854-28424434,28424705-28425078,
            28425235-28425339,28425902-28425970,28426084-28426156,
            28426395-28426478,28426616-28426648,28426731-28426790,
            28427535-28427627,28427851-28427970,28428804-28428886,
            28428887-28429007,28429114-28429164,28429245-28429333,
            28429429-28429561,28430220-28430354,28430581-28430952,
            28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 688  ECFFQFVEIFXHVLHNLCKSLTEPIHIHWIIIKFPECLSNWEKCICRIKVCLWEYRW 518
            E F    E+    +H   +S  E +H  + ++K    L   +K +  + +CLW  RW
Sbjct: 1008 EAFASLSELLTQYIHQKVESDIEELHKCFRLLKR---LQLAKKFVLEVSLCLWNTRW 1061


>06_01_1183 + 10157813-10159909
          Length = 698

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -3

Query: 576 LAIGRNVSAELKFVSGNTGGFHSSFSKTHISRNTLL*GVPEPSYISDGSINCNFSTAYRR 397
           L++   VSA     SG  GGF+ SF    ++ + L   +   S++ +GS+     TA   
Sbjct: 15  LSLLLTVSASAAAASGGGGGFNVSFDSAALAFSDLT--LLGDSFLRNGSVGLTRDTAVPS 72

Query: 396 S*YCSVRCFITYSYESG 346
           S   SV C    ++  G
Sbjct: 73  SSAGSVLCSRAVAFGGG 89


>11_04_0307 +
           16185405-16185713,16185847-16185942,16186626-16186730,
           16186938-16187090,16188395-16188478,16188566-16188694,
           16188986-16189165,16189555-16189677,16189678-16189794,
           16189889-16190053
          Length = 486

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +2

Query: 293 ADYRNLVWKVLLDILPVYPDSYEYVMKQRTEQY-----QDLLYAVEKLQLIEPSEI 445
           A  R LVWK+LL  LP     + + ++++  QY     + LL   EK++  E S++
Sbjct: 127 AAVRPLVWKLLLGYLPTERAFWPHELEKKRSQYSAYKDEFLLNPSEKIRRFEESKL 182


>10_07_0031 +
           12051846-12052059,12052360-12052410,12053514-12053520,
           12053621-12053804,12053920-12054001,12054174-12054243,
           12054460-12054574
          Length = 240

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 299 YRNLVWKVLLDILPV-YPDSYEYVMKQRTEQYQDLLYA 409
           YR LV   + D +P+ YPDSYE V K  T++ +  LYA
Sbjct: 172 YRKLV--EMEDRMPIPYPDSYENVAKAHTQE-RKRLYA 206


>08_01_0537 +
           4666488-4666870,4667706-4667850,4668299-4668392,
           4668518-4668798
          Length = 300

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 599 DPVDVYWFSKRFTEVVKNMXKDLNKL 676
           D +D  +FS+   EVVK   KDL+KL
Sbjct: 124 DAIDRVYFSEAPIEVVKEQDKDLSKL 149


>04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174
          Length = 202

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 515 KPPVFPETNFNSADTFLPIAKTLRELYDDP 604
           +PP  PE++ N    FLP+ +  R   D P
Sbjct: 159 QPPTLPESSVNPTSHFLPVHQEHRSHQDGP 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,623
Number of Sequences: 37544
Number of extensions: 325339
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)