Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M16
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7154| Best HMM Match : bZIP_1 (HMM E-Value=2)                       90   2e-18
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_9072| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)                  28   8.4  

>SB_7154| Best HMM Match : bZIP_1 (HMM E-Value=2)
          Length = 287

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 15/178 (8%)
 Frame = +2

Query: 155 RNFRSSYYXXVGCRGVXXKXTLEILMKEKPWDRVKLKQFCLRFTVFADYRNLVWKVLLDI 334
           RNFRS YY  +G R V  K  L IL+K+ P D  ++  F  +F++ A YR LVWK+LL +
Sbjct: 7   RNFRSFYYETLGLRNVEQKKALAILLKDNPIDLSRVATFSCKFSLPAVYRTLVWKILLGV 66

Query: 335 LPVYPDSYEYVMKQRTEQYQDLLYAVEKLQLIE--------PSEIY---DGS----GTPQ 469
           LP Y D++ +V +QR EQ +DL +A++ +Q  E         S++Y   +G       PQ
Sbjct: 67  LPPYQDAHPFVEEQRREQCKDLKHALQIMQNEECNMDVADVISKMYVLQEGGLCLISIPQ 126

Query: 470 SKVFLEMWVLENEEWKPPVFPETNFNSADTFLPIAKTLRELYDDPVDVYWFSKRFTEV 643
            KV LE    EN+     V  +     A     + +   ++++D  D+YW S +F ++
Sbjct: 127 LKVRLEP---ENDN-LIHVLIQRMQECASQIRAVVEVFVDMFEDFDDLYWLSVKFIQL 180


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 545  NSADTFLPIAKTLRELYDDPVDVYWFSKRFTEVVKNMXKDLNK 673
            ++A TF   AK LRELYD P    W+   +  ++ ++ + L K
Sbjct: 1309 DNAKTFKAAAKALRELYDHPEKAPWWGGFYERMIGSVKRGLRK 1351


>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +2

Query: 371 KQRTEQYQDLLYAV--EKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEEWKPPVFPETNF 544
           K  T + +DL  A+  + L++++     + S       F ++ V E ++        +N 
Sbjct: 190 KTYTGEEEDLRRAIWNDNLEIVKKHNAENHSYKLDMNHFADLTVTEFKQRFMGYRAASNS 249

Query: 545 NSADTFLPIAKTLRELYDDPVDVYWFSKRFTEVVKNMXKDLNKLKEAF 688
               TFLP++    +L   P +V W  K F   VKN  K +   ++ F
Sbjct: 250 TGGSTFLPLSNV--QL---PAEVDWRDKGFVTAVKNQEKKIEMAQKQF 292


>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 518 PPVFPETNFNSADTFLPIAKTLRELYDDPVDVYWFSKRFTEVVKNMXKDLNKLKEAF 688
           PP++P+ N +S D    ++   R+L  DP    +FS      +KN   ++  LK+ F
Sbjct: 181 PPLYPDWNQSSFDLVEVLSAVNRDLNIDP----FFSTMVESDLKNSTNNMITLKQTF 233


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 435 HQKYMTVQVPLRA--KYSWRCGF*KMKNGNHLYSQRQTLILQIHFSQLLRH 581
           H + MT    L+   KY+W       K     + +RQ L L + F++LL H
Sbjct: 532 HVRGMTRSAALQLFQKYTWDTSDLSSKEITRCFDERQVLALTLIFARLLEH 582


>SB_9072| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
          Length = 217

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 299 YRNLVWKVLLDILPVY--PDSYEYVMKQRTEQYQDLLYAVEKLQ 424
           ++NL+W+VL D    +   D    V + + E  ++L+ AV+KLQ
Sbjct: 123 FQNLIWQVLKDCPGAFNMHDDILIVGRNQKEHDENLVRAVQKLQ 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,665,352
Number of Sequences: 59808
Number of extensions: 377898
Number of successful extensions: 836
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)