Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M16
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    29   3.2  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    29   4.2  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    29   4.2  
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 655 HVLHN--LCKSLTEPIHIHWIIIKFPECLSNWEKCICRIKVCLWEYRWFPFF 506
           ++LHN  L +     I I + I+   + L+ W   + R ++ L   +WFP++
Sbjct: 115 YILHNPALSRLTLLKISIMFYILSLVQALTYWTLFVPRKEIILHAKQWFPYY 166


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
           protein 3, isoform b protein.
          Length = 1361

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +2

Query: 410 VEKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEEWKPPVFPETNFNSADTFLPIAKTLRE 589
           + K  L + +++ +   T + K+F E W L +  +KP   P  +FNS      ++K L +
Sbjct: 202 LSKEALQQHTKLMEEISTYEVKMFNETWTLSDICFKP---PGPSFNSGPLAGIMSKLLDK 258

Query: 590 ----LYDDPVDVYW 619
               ++  P+D YW
Sbjct: 259 IIPCIWITPIDCYW 272


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
           protein 3, isoform a protein.
          Length = 1358

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +2

Query: 410 VEKLQLIEPSEIYDGSGTPQSKVFLEMWVLENEEWKPPVFPETNFNSADTFLPIAKTLRE 589
           + K  L + +++ +   T + K+F E W L +  +KP   P  +FNS      ++K L +
Sbjct: 202 LSKEALQQHTKLMEEISTYEVKMFNETWTLSDICFKP---PGPSFNSGPLAGIMSKLLDK 258

Query: 590 ----LYDDPVDVYW 619
               ++  P+D YW
Sbjct: 259 IIPCIWITPIDCYW 272


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 317 KVLLDILPVYPDSYEYVMKQRTEQYQDLLYAVEKLQLIEPS 439
           K   +I  V P  Y  +    T  Y+ L  AVE+L L +PS
Sbjct: 316 KTFAEIKGVKPTVYAGLFPVETSDYESLKQAVERLCLNDPS 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,851,406
Number of Sequences: 27780
Number of extensions: 305773
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)