Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M15
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   3.1  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    26   4.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   4.0  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   7.1  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   7.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   9.3  

>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 203 ERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 310
           +R+N    Q +++L +SN+ +  +  E  K  SNSN
Sbjct: 550 KRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN 585


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 200 LERKNDDIHQQLKELLQSNIAIRQEMRE 283
           LER+ DD+ Q+L+E+      ++ E+ E
Sbjct: 126 LERERDDMEQKLEEMTDKYTKVKAELDE 153


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/28 (32%), Positives = 22/28 (78%)
 Frame = +2

Query: 200 LERKNDDIHQQLKELLQSNIAIRQEMRE 283
           L+R+N+++ +QLK   + NI++++++ E
Sbjct: 655 LKRENEELREQLKVEHEENISMQKQLSE 682


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 200 LERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNAN 325
           L+ + + +  Q+K LL+ N ++++ +     D  N    NAN
Sbjct: 327 LKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNAN 368



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +2

Query: 215 DDIHQQLKELLQSNIAIRQEMREENKDVSNSN 310
           + +H  L+ L Q+N +++ E+ E+N ++++ N
Sbjct: 532 EKLHDSLETLSQTNNSLQCEISEKNAELNSVN 563


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 414 Y*YYHLSIFSDQYHKVSVSF--K*CIIIHLQYLSMNNYLACLHHLNVISCIFMSVG 575
           Y  Y++S     Y+ + + F  +  +++HL+    +++    HH+   + I +S G
Sbjct: 192 YPQYYMSPLFKAYYLIQLGFWLQQILVLHLEQRRADHWQMFAHHIVTCALIILSYG 247


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = +3

Query: 216 MIFTNN*KSFCNPILQLDKK-CV--KKIRTSATVIEEM 320
           ++ ++N K+F NP++ L +K CV  +K+    TV ++M
Sbjct: 202 LLHSSNLKAFINPLIPLTQKFCVQLQKLFADLTVSDQM 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,248
Number of Sequences: 5004
Number of extensions: 37545
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)