Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M15
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U22831-14|AAN84802.1|  334|Caenorhabditis elegans G-protein-link...    28   6.5  
U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-link...    28   6.5  
U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-link...    28   6.5  
U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-link...    28   6.5  
AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-lin...    28   6.5  
AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-lin...    28   6.5  
AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-lin...    28   6.5  

>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  HQMACAHPKNGGANANGSHQNIAPP 114
           HQ+  ++ + GG N N  HQ I PP
Sbjct: 503 HQLGHSNVRMGGLNHNQHHQQIGPP 527


>U22831-14|AAN84802.1|  334|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform e protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 639 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 508
           +YVL T + FCE C     F+ L T    L ++N  + LN + Y
Sbjct: 271 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 312


>U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform b protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 639 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 508
           +YVL T + FCE C     F+ L T    L ++N  + LN + Y
Sbjct: 551 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 592


>U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform a protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 639 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 508
           +YVL T + FCE C     F+ L T    L ++N  + LN + Y
Sbjct: 564 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 605


>U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform c protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 639 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 508
           +YVL T + FCE C     F+ L T    L ++N  + LN + Y
Sbjct: 604 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 645


>AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2b protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 639 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 508
           +YVL T + FCE C     F+ L T    L ++N  + LN + Y
Sbjct: 564 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 605


>AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2a protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 639 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 508
           +YVL T + FCE C     F+ L T    L ++N  + LN + Y
Sbjct: 601 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 642


>AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-2c protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 639 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 508
           +YVL T + FCE C     F+ L T    L ++N  + LN + Y
Sbjct: 551 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,341
Number of Sequences: 27780
Number of extensions: 220322
Number of successful extensions: 594
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)