Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M13
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.4  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    24   7.3  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    24   7.3  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    24   9.7  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +3

Query: 123 PNSLSHPAGVERGL----PSPALCPAGTMKPWRLFINLFRMKLKNSCYAR 260
           P+S   P G  RG     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 49  ELPQPKMYKFTILFLXFGLLHNGRSPTHFHIQLGWKE 159
           E  +P  Y  T L+    L H+G    HF ++  W+E
Sbjct: 245 ENDRPDSYSSTQLYCVLCLDHSGTDLEHFELR-SWRE 280


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 87  IPXFWLAS*WPKPNSLSHPAGVERGLPSPALCPAGTMK---PWRLFINLFRMKLKNSCYA 257
           IP +W A    K ++   P+ +E+   S       ++      +LF+N    + KNS   
Sbjct: 18  IPYYWNAE--LKKSTYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENAEERKNSRDL 75

Query: 258 RSLKPTPPKRKHR 296
           R   P  PK K R
Sbjct: 76  RKQLPDRPKFKKR 88


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 244 TPAMPEALSRHHRNGNTDKMPFN 312
           TP+   A++  H++G  D MP N
Sbjct: 12  TPSAITAMAFSHKSGQNDSMPNN 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,194
Number of Sequences: 5004
Number of extensions: 32359
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)