Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M08
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    91   2e-19
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    62   7e-11
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    27   3.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   4.1  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   9.4  

>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
 Frame = +2

Query: 197 MKITRYKKVQKYLKFYYNNYGFHQPYQVLIDGTFCFAAFKEHINIREQIPKYLNSQAKLL 376
           M+  R K  +K +  Y   +GF +PYQVL+D  F     ++ I+I+  + + +    K +
Sbjct: 1   MRQKRAKNYRKLMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPM 60

Query: 377 TTRCIIIETEKLAKKTHGALTILKQFGIHECGH-KEPVAGSKCIMSM--IGKKNEKHYIL 547
            T+C I +    + +    + I K F    CGH  E ++ S+CI S+  I  +N+  Y++
Sbjct: 61  ITQCCIRQLYSKSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVV 120

Query: 548 ATQDRDLQSKLREKPGVPLLYLHNKSPTLEKPS 646
           ATQD +L+  LR  PGVPL+Y+      LE  S
Sbjct: 121 ATQDPELRQALRSVPGVPLIYMKRSVVILEPAS 153


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
 Frame = +2

Query: 239 FYYNNYGFHQPYQVLIDGTFCFAAFKEHINIREQIPKYLNSQAKLLTTRCIIIETEKLAK 418
           F+  N     PY V+ID  F     ++ I++ E +   L ++     + C++ E EKL  
Sbjct: 54  FFQFNESLGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGI 113

Query: 419 KTHGALTILK--QFGIHECGHKEPVAGSKCIMSMIGKKNEKHYILATQDRDLQSKLREKP 592
           +   AL I K  +F    C HK   A   CI+  +     K Y++AT D++L+ ++R+ P
Sbjct: 114 RYRIALRIAKDERFERLPCTHKGTYADD-CIVQRV--MQHKCYLVATNDKNLKQRIRKIP 170

Query: 593 GVPLLYLHNKSPTLEK 640
           G+P+L + N    +E+
Sbjct: 171 GIPILSVANHKIRVER 186


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +1

Query: 160 KRLFTKARFVIKNENNTLQKSTEISKVLLQQLWISSAVPSPYRWYILFRCIQRAY*HQRA 339
           + L +   FV K  + +L K TE+++ L  Q+ + S  P+P  +     C  R Y +   
Sbjct: 104 RNLISLNLFVDKPLDISLLK-TELNEALCSQIRVWSVFPAPKYFNPRISCESRTYEYLIP 162

Query: 340 N-SQVPKQPG*TTDNEMYNYRNRKISKENTRS 432
           + + +P +P      +M    +RK+  E  R+
Sbjct: 163 SFALLPPKPSCPLFKKMQKNLSRKLDNELERN 194


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 237  SFITTIMDFISRTKSLSMVHFVSLHSKSILTSESK 341
            SF+ +    +S+ +S S++ FVSLH + I  S  K
Sbjct: 1250 SFLLSRNPELSKNESSSILQFVSLHRQKIRISRKK 1284


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 600 GTPG-FSLNLDCRSRSWVAKI*CFSFFLPIMDIMHLDPATGSLCP 469
           GT G  ++N D  SR+ + +  C S  LPIM+   +DPA   + P
Sbjct: 495 GTFGEVTINTDSVSRTALGR--CQSMVLPIMNKWTVDPAAKDVKP 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,333
Number of Sequences: 5004
Number of extensions: 56218
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)