Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M08
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0164 - 15862166-15862366,15862443-15862508,15862754-158630...   111   6e-25
06_01_0419 - 2990827-2990834,2991432-2991510,2991594-2991650,299...    62   4e-10
11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683...    29   3.2  
01_06_1132 - 34769800-34769955,34770098-34770157,34770259-347703...    29   5.6  

>02_03_0164 -
           15862166-15862366,15862443-15862508,15862754-15863029,
           15864869-15864989,15865091-15865368
          Length = 313

 Score =  111 bits (267), Expect = 6e-25
 Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 3/153 (1%)
 Frame = +2

Query: 197 MKITRYKKVQKYLKFYYNNYGFHQPYQVLIDGTFCFAAFKEHINIREQIPKYLNSQAK-- 370
           M++ R  K +K ++FY   +GF +PY+VL+DGTF        +   +   + L S ++  
Sbjct: 1   MRVKRRSKNRKVVRFYATCFGFREPYRVLVDGTFVHHLLSHSLLPADDALQSLLSASRPP 60

Query: 371 -LLTTRCIIIETEKLAKKTHGALTILKQFGIHECGHKEPVAGSKCIMSMIGKKNEKHYIL 547
            L T++C++ E  +L K    A          +C H + V+   C++S+IG+KN +H+ +
Sbjct: 61  PLFTSKCVLAELRRLGKSHADAFDAAALLATAKCEHDKVVSAVDCVLSLIGEKNPEHFFV 120

Query: 548 ATQDRDLQSKLREKPGVPLLYLHNKSPTLEKPS 646
           ATQD DL++KLRE PGVP++Y    S  +E+PS
Sbjct: 121 ATQDSDLRAKLREVPGVPVIYGLKSSLFIEQPS 153


>06_01_0419 -
           2990827-2990834,2991432-2991510,2991594-2991650,
           2992307-2992394,2992626-2992698,2993020-2993089,
           2993824-2993929,2994027-2994092,2994175-2994248
          Length = 206

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 11/152 (7%)
 Frame = +2

Query: 218 KVQKYLKFYYNNYGFHQPYQVLIDGTFCFAAFKEHIN---------IREQIPKYLNSQAK 370
           +V   L F YN      PY+V++D  F   + +  +N         + + +   L ++  
Sbjct: 49  QVSSALFFSYNT-ALGPPYRVIVDTNFINFSIQNKLNASLTPMQLDLEKGMMDCLYAKCT 107

Query: 371 LLTTRCIIIETEKLAKKTHGALTILK--QFGIHECGHKEPVAGSKCIMSMIGKKNEKHYI 544
              T C++ E EKL +K   AL I K  +F    C HK   A   CI+  + +   K YI
Sbjct: 108 PCITDCVMAELEKLGQKYRVALRIAKDPRFQRLACTHKGTYADD-CIVERVTQ--HKCYI 164

Query: 545 LATQDRDLQSKLREKPGVPLLYLHNKSPTLEK 640
           +AT DRDL+ ++R+ PGVP++Y+     ++E+
Sbjct: 165 VATCDRDLKRRIRKVPGVPIMYITRHRYSIER 196


>11_04_0351 +
           16666398-16666532,16666911-16667048,16667398-16668306,
           16668383-16668511,16668774-16668996,16669085-16669231,
           16669332-16669573,16669660-16669689,16669784-16669865,
           16669968-16670128,16670775-16670898,16671206-16671414
          Length = 842

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 363 WLFRYLGICSLMLICSL-NAAKQNVPSI 283
           WL+ ++ + SLMLIC L N AK N+  I
Sbjct: 760 WLYNFVLLLSLMLICYLCNLAKFNISGI 787


>01_06_1132 -
           34769800-34769955,34770098-34770157,34770259-34770334,
           34770412-34770533,34770634-34770708,34770899-34771025,
           34771126-34771214,34773479-34773535,34773584-34773661
          Length = 279

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 250 VVIKL*IFLYFFVTCYFHFLLRTSLL*IVFFLGFY 146
           +V ++ +F+YFF   YFHF    S    +F LGFY
Sbjct: 208 LVARVILFIYFFTHMYFHFDQVKS----IFPLGFY 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,547
Number of Sequences: 37544
Number of extensions: 307466
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)