Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M08
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)             32   0.61 
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)                   31   1.4  
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)                  30   2.5  
SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)                      29   3.3  
SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67)                    29   5.7  
SB_51880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_51100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_33335| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)
          Length = 653

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 386 CIIIETEKLAKKTHGALTILKQFGIHECGHKEPVAGSKCIMSMIGKKN 529
           CIII T   +   H      ++   H+C  K    GS+C +SM+GK+N
Sbjct: 95  CIIIVTVSWSFDHHNHHRRRRRHQHHKCLFKSCPKGSECTISMMGKEN 142


>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
          Length = 1826

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 587 KPGVPLLYLH---NKSPTLEKPSSVSFEKAGQALETNEHIF 700
           KP  PL Y+H   N  PT+ K  S S  K    L +N+  F
Sbjct: 716 KPNAPLQYVHRESNNPPTITKNISASINKRLSTLSSNKETF 756


>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
          Length = 1086

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +2

Query: 254 YGFHQPYQVLIDGTFCFAA----FKEHINIREQIPKYLNSQAKLLTTRCIIIE 400
           Y FHQ  Q L +    F A      EH N  E +P+ L  + KLL  R + +E
Sbjct: 93  YKFHQRNQALGEDINAFVASLKQMTEHCNFGEFLPQALRDRFKLLCERDLTLE 145


>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
          Length = 1702

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 669  PAFSKLTLLGFSNVGDLLCRYRRGTPGFSLNLDC 568
            PAF  +TL+ F N  + + RY   T G +  L+C
Sbjct: 1553 PAFFNITLIDFENKTEKIIRYVMKTNGDNCTLEC 1586


>SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67)
          Length = 336

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 587 KPGVPLLYLHNKS---PTLEKPSSVSFEKAGQALETNEHIF 700
           KP  PL Y+H +S   PT+ K  S S  K    L +++  F
Sbjct: 37  KPNAPLQYVHRESNLQPTITKNISASINKRLSTLSSDKETF 77


>SB_51880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +2

Query: 587 KPGVPLLYLH---NKSPTLEKPSSVSFEKAGQALETNEHIF 700
           KP  PL Y+H   N  PT+ K    S  K    L ++E  F
Sbjct: 41  KPNAPLQYVHRESNHQPTITKNIPASINKRLSTLSSDEETF 81


>SB_51100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +2

Query: 587 KPGVPLLYLH---NKSPTLEKPSSVSFEKAGQALETNEHIF 700
           KP  PL Y+H   N  PT+ K    S  K    L ++E  F
Sbjct: 46  KPNAPLQYVHRESNHQPTITKNIPASINKRLSTLSSDEETF 86


>SB_33335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 587 KPGVPLLYLHNKS---PTLEKPSSVSFEKAGQALETNEHIF 700
           KP VPL Y+H +S   PT+ K    S  K    L +++  F
Sbjct: 39  KPNVPLQYVHRESNHPPTITKNIPASINKRLSTLSSDKETF 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,711,732
Number of Sequences: 59808
Number of extensions: 395300
Number of successful extensions: 931
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)