Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_M07
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 123 1e-29
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 122 2e-29
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 1.6
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 26 2.9
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 3.8
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 3.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 6.6
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 25 8.7
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 8.7
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 123 bits (297), Expect = 1e-29
Identities = 59/113 (52%), Positives = 75/113 (66%)
Frame = +3
Query: 33 MDVXVALQAVLKPALIXXXXXXXXXXXXXXXDKXQAVLCVLAENCDEAAYKKLVQALCNE 212
+ V +L+ VLK AL+ D+ QA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Query: 213 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 371
Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 90 SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 122 bits (295), Expect = 2e-29
Identities = 58/113 (51%), Positives = 75/113 (66%)
Frame = +3
Query: 33 MDVXVALQAVLKPALIXXXXXXXXXXXXXXXDKXQAVLCVLAENCDEAAYKKLVQALCNE 212
+ V AL+ VLK AL+ D+ QA LCVL E+CD+ AY KLV+ALC E
Sbjct: 27 VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86
Query: 213 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 371
+ PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 87 SETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 359 RWSFLAEIFDDNTGAADNFPCLAIL 285
RW +LA +F N A N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 4 PPTPSCRVTTWTXMSHC 54
PPTPSC T M HC
Sbjct: 133 PPTPSCLKYTLLYMPHC 149
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 183 CMQLHHSSQPKHIVLLAXCQEL*RLREDRAQDHHGLKLALAPLAVRHXRPCCDPT 19
C+ S +HIV A L +D +DH G+ L ++P V + +P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 183 CMQLHHSSQPKHIVLLAXCQEL*RLREDRAQDHHGLKLALAPLAVRHXRPCCDPT 19
C+ S +HIV A L +D +DH G+ L ++P V + +P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 327 QHRSSRQFSLPCHPCQSCRD-QPILQAF 247
+ ++ +QF LP PCQ+ + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 135 QAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 257
+A L ++A + D + ALC + +P V N +LG
Sbjct: 147 KAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 301 GKLSAAPVLSSKISARKLQR 360
G S+A +L+ K+ ARKLQR
Sbjct: 28 GTSSSANILNGKLLARKLQR 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,805
Number of Sequences: 5004
Number of extensions: 31000
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -