Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_M07
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 140 6e-34
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 139 1e-33
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411... 29 1.6
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 3.8
05_04_0167 + 18668004-18668287,18668961-18669043,18669346-186694... 28 3.8
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 5.0
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 5.0
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 6.6
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 140 bits (339), Expect = 6e-34
Identities = 67/128 (52%), Positives = 86/128 (67%)
Frame = +3
Query: 3 PTNPILSGHNMDVXVALQAVLKPALIXXXXXXXXXXXXXXXDKXQAVLCVLAENCDEAAY 182
P P+L G MD+ ALQ V+K + +K A LCVLAE+CD+ Y
Sbjct: 10 PPAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAEDCDQPDY 68
Query: 183 KKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPAL 362
KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KDFGEE+ L
Sbjct: 69 VKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESEGL 128
Query: 363 DVLKDYLK 386
++++DY+K
Sbjct: 129 NIVQDYVK 136
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 139 bits (337), Expect = 1e-33
Identities = 66/128 (51%), Positives = 86/128 (67%)
Frame = +3
Query: 3 PTNPILSGHNMDVXVALQAVLKPALIXXXXXXXXXXXXXXXDKXQAVLCVLAENCDEAAY 182
P P+L G MD+ ALQ V+K + +K A LCVLAE+CD+ Y
Sbjct: 10 PAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAEDCDQPDY 68
Query: 183 KKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPAL 362
KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KD+GEE+ L
Sbjct: 69 VKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEESEGL 128
Query: 363 DVLKDYLK 386
++++DY+K
Sbjct: 129 NIVQDYVK 136
>02_05_0441 +
29040250-29040524,29040656-29040772,29040834-29041143,
29041863-29042018,29042332-29042483,29042783-29042936,
29043897-29043998,29044168-29044209
Length = 435
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +1
Query: 142 YYVFWLRTVMKLHTRNLFRLCATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAP 321
Y V W R KL + CA+ + S + ++++ + LV + +T A
Sbjct: 349 YLVTWARHREKLTIGVPYETCASELLESTSHVVKSRNMASKLVVSAITSFGYILSSLAQN 408
Query: 322 VLSSKISARKLQRWMCSRTTSS 387
V + + +A+K+Q C T++
Sbjct: 409 VDTERSAAKKIQAKFCDSETNN 430
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 156 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 257
A CDE +K + +CN + L + D+N +G
Sbjct: 316 AFKCDEYTVRKCSKVICNRSKNSLYRFDSNASIG 349
>05_04_0167 +
18668004-18668287,18668961-18669043,18669346-18669434,
18670085-18670158,18670234-18670284,18671486-18671553,
18671666-18672234,18672333-18672383
Length = 422
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 225 VESDVRCTEPEQVSCMQLHHSSQPKHIVLLA 133
+ES ++ TEP + + LH +S+P +VL A
Sbjct: 268 IESSMQRTEPYKFPSLGLHSNSKPSSVVLSA 298
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 222 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 353
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1759 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDPT 1802
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 222 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 353
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1755 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDAT 1798
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -1
Query: 318 SSRQFS-LPCHPCQSCRD 268
SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,083,677
Number of Sequences: 37544
Number of extensions: 224751
Number of successful extensions: 723
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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