Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M07
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...   118   3e-27
Z83122-8|CAF31484.1|  582|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83122-7|CAF31483.1|  618|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83122-6|CAF31482.1|  587|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83122-5|CAB05600.1|  654|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    29   2.6  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    28   4.5  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U29614-3|AAA68811.1|   91|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    27   7.9  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score =  118 bits (283), Expect = 3e-27
 Identities = 58/116 (50%), Positives = 72/116 (62%)
 Frame = +3

Query: 33  MDVXVALQAVLKPALIXXXXXXXXXXXXXXXDKXQAVLCVLAENCDEAAYKKLVQALCNE 212
           MD   AL+AVL+ A                 DK +A  CVLAENCDE  Y KLV+ LC E
Sbjct: 20  MDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAE 79

Query: 213 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 380
           HQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS  V+ ++G E     +L DY
Sbjct: 80  HQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDY 135


>Z83122-8|CAF31484.1|  582|Caenorhabditis elegans Hypothetical
           protein R11A5.4b protein.
          Length = 582

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 103 RPCTRPPWIKAGFSTACSATXTSML*PDKMG 11
           RPC R  +I A F +AC  T  +ML P   G
Sbjct: 303 RPCGREHFIAAAFPSACGKTNLAMLEPTLPG 333


>Z83122-7|CAF31483.1|  618|Caenorhabditis elegans Hypothetical
           protein R11A5.4d protein.
          Length = 618

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 103 RPCTRPPWIKAGFSTACSATXTSML*PDKMG 11
           RPC R  +I A F +AC  T  +ML P   G
Sbjct: 267 RPCGREHFIAAAFPSACGKTNLAMLEPTLPG 297


>Z83122-6|CAF31482.1|  587|Caenorhabditis elegans Hypothetical
           protein R11A5.4c protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 103 RPCTRPPWIKAGFSTACSATXTSML*PDKMG 11
           RPC R  +I A F +AC  T  +ML P   G
Sbjct: 236 RPCGREHFIAAAFPSACGKTNLAMLEPTLPG 266


>Z83122-5|CAB05600.1|  654|Caenorhabditis elegans Hypothetical
           protein R11A5.4a protein.
          Length = 654

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 103 RPCTRPPWIKAGFSTACSATXTSML*PDKMG 11
           RPC R  +I A F +AC  T  +ML P   G
Sbjct: 303 RPCGREHFIAAAFPSACGKTNLAMLEPTLPG 333


>U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical
           protein C07G1.2 protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +1

Query: 25  VTTWTXMSHCKRC*SQL*SMVVLCTVFTXPLK----LLTXGKQYYVFWLRTVMKLHTRNL 192
           +  WT + H + C  +    +++C  F+   K    LLT   Q +    R +  L+ R  
Sbjct: 368 IEVWTFIPHVQGCARKCRESLLMCEAFSYEPKSQTCLLTDTSQTFSSLARKITSLYYRRR 427

Query: 193 FRLCATNIRFHLSRLTTTKSLENGLV 270
           F       +     L  TKS + G V
Sbjct: 428 FSTKDVEFQVENKVLYATKSAKKGHV 453


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 207 NEHQIPLVKVDNNKKLGEWAGLCK 278
           N++Q+ +  V+NNKK+ +W G  K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 144 LCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 257
           +C+LA N         +  +C E +IP V + + ++LG
Sbjct: 87  ICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 185 LVCSFITVLSQNT*YCLPLVKSFSGXVK 102
           L+C+ I ++ Q +  CLPLVK F+   K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 185 LVCSFITVLSQNT*YCLPLVKSFSGXVK 102
           L+C+ I ++ Q +  CLPLVK F+   K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 270 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 377
           L K  K+ K +K+     + ++DF EETP  +  +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523


>U29614-3|AAA68811.1|   91|Caenorhabditis elegans Hypothetical
           protein F18E9.6 protein.
          Length = 91

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +1

Query: 163 TVMKLHTRNLFRLCATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAP 321
           T M L T+ L  +  T +R     LTT      GL   RLT +    + S  P
Sbjct: 14  TTMDLTTKGLSTMGLTTMRLTTMDLTTKGLSTMGLTRMRLTTIGLYNRTSGGP 66


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +1

Query: 205 ATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 369
           +T+      RL        G V+AR+T +A  G   A    S  ++ R    W C
Sbjct: 4   STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,707
Number of Sequences: 27780
Number of extensions: 194157
Number of successful extensions: 561
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)