Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M02
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    87   3e-18
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.8  

>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
 Frame = +2

Query: 386 AQISSMLQQPVVQDMAIQYGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLM 565
           A  S+ L       M  Q G      G+E V++   K++  +RL +YF V   YV+ KL+
Sbjct: 42  ANPSAYLPNSATAQMGFQLGKNAVNAGQEYVEQNFGKWLSTTRLHHYFTVTNSYVVAKLL 101

Query: 566 LIVFPYTHKEWMVKY-------DQDTPVQPRYDINAPDLYIPSMGYVTYVLLAGFMLGLQ 724
           LI+FP+  + W  K          +    P  D+N+PD+YIP M + T++LL   + GLQ
Sbjct: 102 LIIFPWRRRSWARKLRRSEINGSAEGYCPPAEDLNSPDMYIPLMAFTTHILLLCALAGLQ 161

Query: 725 HRFSPEQIGIQ 757
             F PE  G++
Sbjct: 162 DDFQPELFGLR 172


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 628 AAPVRHQRPGPVHTLHGVRHVRAAGRLHVRSSAQILTGTNRH 753
           +APVR +R  P H+    R +    R++ +++ + L   + H
Sbjct: 351 SAPVREKRNRPAHSAQISRSISKTSRMYRQTAEEPLNSYSLH 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,208
Number of Sequences: 5004
Number of extensions: 72793
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)