Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M02
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0336 - 4414227-4414608,4414690-4414841,4414931-4415029,441...    83   2e-16
06_03_0781 - 24533949-24534330,24534666-24534817,24534901-245349...    81   1e-15
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864...    30   2.6  
04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826...    29   3.4  
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147...    29   3.4  
01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869     29   5.9  

>04_01_0336 -
           4414227-4414608,4414690-4414841,4414931-4415029,
           4415131-4415340
          Length = 280

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
 Frame = +2

Query: 440 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQD 619
           YG +      E +Q  ++++   S  +YYF V+ +YV  KL +I+FP+ H+    +  + 
Sbjct: 55  YGEKFLGSSSEFMQSNINRYF--SNPQYYFHVNDQYVRNKLKVILFPFLHRGHWTRISEP 112

Query: 620 TPVQ-----PRYDINAPDLYIPSMGYVTYVLLAGFMLGLQHRFSPEQIGIQ 757
              +     P YDINAPDLYIP M + ++++LAGF LG   +F+PE I +Q
Sbjct: 113 VGGRLSYKPPIYDINAPDLYIPFMAFGSFIILAGFTLGFMGKFTPEAINLQ 163


>06_03_0781 -
           24533949-24534330,24534666-24534817,24534901-24534999,
           24535127-24535302,24535983-24536292
          Length = 372

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
 Frame = +2

Query: 440 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQD 619
           YG +      E +Q  + +++  S  +YYF V+++YV  KL +I+FP+ H+    +  + 
Sbjct: 147 YGEKFLGSSSEFMQSNITQYL--SNPQYYFQVNSQYVRNKLKVILFPFLHRGHWTRITEP 204

Query: 620 TPVQPRY-----DINAPDLYIPSMGYVTYVLLAGFMLGLQHRFSPEQIGIQ 757
              +  Y     DINAPDLYIP M + TYV++AG+ LG+  RF+PE + +Q
Sbjct: 205 VGGRLSYKPPIQDINAPDLYIPLMAFGTYVVIAGYALGVLGRFTPEALTLQ 255


>08_02_1097 +
           24284494-24284496,24284946-24285407,24285476-24286450,
           24286566-24286655,24286760-24287021,24287447-24287472
          Length = 605

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 532 RKIVPQPRDWHKLVQFSLHSLLALSRELVA 443
           R +V  PR +HK+    LH LL ++R L+A
Sbjct: 115 RMVVQMPRVFHKVCLPKLHQLLVIARRLLA 144


>04_01_0628 -
           8266494-8266501,8266578-8266875,8268055-8268313,
           8268892-8269052,8269553-8269884,8270947-8271265,
           8271335-8271420,8271600-8271684
          Length = 515

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 382 PGANKLYAATTCSPGHGYSIRQPARGSRQGGCATRIAQVCASLEAAVLFCGRYKIC 549
           PGA     +   S  +G    Q A  ++  G   R+A     LEA V +C R++ C
Sbjct: 387 PGAMDSAVSKHLSHAYGTLATQVASIAQNEGLGKRLAHGYPFLEAEVAYCARHEYC 442


>02_05_0839 -
           32113992-32114210,32114321-32114484,32114612-32114708,
           32115822-32115944,32116770-32117141
          Length = 324

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -3

Query: 777 RPGHWT---PWMPICSG----ENLC*RPNMKPASSTYVTYPMEGMYRSGA 649
           RPGHW+   P  P  +G    +N    PN KP++S +  YP     +S A
Sbjct: 14  RPGHWSRDCPSEPAGAGAASTDNPNPNPNPKPSASRFAPYPRPRFGKSAA 63


>01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869
          Length = 400

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 382 PGANKLYAA-TTCSPGHGYSIRQPARGSRQGG 474
           PG + L     +C PGHG SI    + S +GG
Sbjct: 228 PGTSNLRVEHVSCGPGHGISIGSLGKESEEGG 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,110,438
Number of Sequences: 37544
Number of extensions: 523837
Number of successful extensions: 1416
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)