Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M02
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27112| Best HMM Match : Hrf1 (HMM E-Value=1.1e-07)                 103   1e-22
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   30   2.0  
SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  

>SB_27112| Best HMM Match : Hrf1 (HMM E-Value=1.1e-07)
          Length = 227

 Score =  103 bits (248), Expect = 1e-22
 Identities = 50/108 (46%), Positives = 70/108 (64%), Gaps = 22/108 (20%)
 Frame = +2

Query: 428 MAIQYGNQLAAQGKEAVQRE----------------------LHKFVPVSRLRYYFAVDT 541
           MA QYG  +A+QGKE V++                       L +FV +S+L+YYFAVDT
Sbjct: 1   MAFQYGTNVASQGKEYVEKNVIVFSFSNSVEMYLRYSNKWLTLDRFVSISKLKYYFAVDT 60

Query: 542 RYVIRKLMLIVFPYTHKEWMVKYDQDTPVQPRYDINAPDLYIPSMGYV 685
            YV++KL L++FP+THK W V+Y+++ PV PRY++NAPDLYIP  G +
Sbjct: 61  SYVVKKLGLLLFPFTHKNWAVQYNKEEPVAPRYEVNAPDLYIPGKGLI 108


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +2

Query: 497  FVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQDTPVQPRYDINAPDLYIPSM 676
            +  VSR +  F       + +   IV     ++  + ++ D      +   APD+YIPS 
Sbjct: 1713 YTDVSRKQKKFVFKVPQFVNQWRRIVVTLDKRKASLYFECDKGESIEFPFKAPDMYIPSA 1772

Query: 677  GYVTYVLLAGFMLG 718
              + Y+  AG+M G
Sbjct: 1773 SGL-YIARAGWMRG 1785


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -2

Query: 205 THGSYITYSFCFTDGT 158
           T GSY+TYSF F DGT
Sbjct: 807 TDGSYVTYSFYFGDGT 822


>SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -2

Query: 544 SCIDRKIVPQPRDWHKLVQFSLHSLLALSRELVAVLNSHVLDYRLLQHRAYLRRGSHWRR 365
           + + R   P+  DW+ +V FSL  L+ +   +V V++ +  D R  +    L  G+  +R
Sbjct: 214 AAMPRVSYPKALDWYLMVSFSLVFLVLIECMIVFVISKYKNDRRKRRISKILNSGNSTKR 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,513,868
Number of Sequences: 59808
Number of extensions: 602085
Number of successful extensions: 1378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)