Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_M02
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   2.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   2.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   2.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.9  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 391 NKLYAATTCSPGHGYSIRQPARGSRQGGCATRI 489
           +K Y     +PGH   I+    G+ Q  CA  I
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 42


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 391 NKLYAATTCSPGHGYSIRQPARGSRQGGCATRI 489
           +K Y     +PGH   I+    G+ Q  CA  I
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 58


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 391 NKLYAATTCSPGHGYSIRQPARGSRQGGCATRI 489
           +K Y     +PGH   I+    G+ Q  CA  I
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 115


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 394 KLYAATTCSPGHGYSIRQPARGSRQGGCATRI 489
           K Y     +PGH   I+    G+ Q  CA  I
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 115


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 505 WHKLVQFSLHSLL 467
           W ++V+FSL+S+L
Sbjct: 290 WQQIVKFSLNSIL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,133
Number of Sequences: 438
Number of extensions: 6114
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)